Lag0011574 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011574
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nucleolar protein 58-like
Location	chr1: 28057216 .. 28058094 (+)
RNA-Seq Expression	Lag0011574
Synteny	Lag0011574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGGTAGTTCAGACTGATACCCCTTTGCCGTCGACATCTGATTTTGAGAAAGAGATTACAGAAAGAGAAGAACAGGAGAAAAAGGAAGCATAGGACAAAGCGAGAGAAGAAACAAAAAGGAAAGCAGAGGAGGAAATATTGCCCGAACAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGTATATAGAGATGCTGAAAAGAGACTTTCTGTTTGAATGAGGATATGGGGATGATCTGCCACGGTTCTTGAGGATTGGAATAGTGAACCATGGTTGGGGTTAGTTCTACGCAAAGCCAGAGCTGGTCAATTCTAATGTTGTCCGTGAGTTTTATGCAAATATTGATGATCAAGAAGGATTTCAGGCTATCGTTCAAGGAGTGCCAGTGGATTGGAGCCCAGGGGCCATCAATTCTCTTTTCAACCTTCAAGACTTTTTGCACGCAGGCTTCAATGAGATGGTGGTAGCACCATCGAATGATTAGTTAAATGCGGCTGTCAGGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

mRNA sequence

ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

Coding sequence (CDS)

ATGCGAGAGGTTCCCCGTTGGAAGCAGAAAGCCGGTCGTGTCAAGAGGGAAGACAAAGGCAAAGGCATTGCTGAAGCATCGGCTGAAGCTGATGATGTTGATACTGGGGAAATACGGTTGCTGTACAACCACTTCATCAACAATCTTGCCCGAGCAAAGGAGATTGGCATCGAGGGGGCTCAGTGGAGAATTTCGAAGACAGAAAAGCGCACATTTCAAGCTGCTTATTTGAAAAGCGAAGCCAATACATGGATGGGCTTCATCAAGTTGCACTTGTTGTCGACAACTCGCGATTCAACGGTGTCTCGAGATCGGGTATTGCTTGTGTTTTCTATTCTTCGTTCGATGAGTATTGATGTGGGCAAAATCATTTCTACTGAGATTTATGAATGTTGGCGGAAGAAGGTATGA

Protein sequence

MREVPRWKQKAGRVKREDKGKGIAEASAEADDVDTGEIRLLYNHFINNLARAKEIGIEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSIDVGKIISTEIYECWRKKV

Homology

[Close]

BLAST of Lag0011574 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-07
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 57  IEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSM 116
           IEGAQW+ S  E  +F+ + +K E   W+ F+   LL +T  S V++DR +L+++I+   
Sbjct: 139 IEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVLIYAIVTHK 198

Query: 117 SIDVGKIISTEIYECWRKK 136
           SIDVGK+IS  I    R K
Sbjct: 199 SIDVGKVISHAILRTGRNK 217

[Close]

BLAST of Lag0011574 vs. NCBI nr
Match: EOY08849.1 (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-07
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 57  IEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSM 116
           + GAQW+ S  E  +F+ + +K E   W+ F+   LLS+T  S V++DR +L+++I+   
Sbjct: 94  VRGAQWKTSHDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHK 153

Query: 117 SIDVGKIISTEIYECWRKK 136
           SIDVGK+IS  I    R K
Sbjct: 154 SIDVGKVISHAILHTGRTK 172

[Close]

BLAST of Lag0011574 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 42  YNHFINNLAR------AKEIGIEGAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLST 101
           ++ FI N+         + + + GA+W +S     T   + L   A  W  F+K HLL T
Sbjct: 120 HSEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPT 179

Query: 102 TRDSTVSRDRVLLVFSILRSMSIDVGKIISTEIYECWRKK 136
           T   TVS+DR+LL+ S+L   SI+VG++I +EI  C  +K
Sbjct: 180 THGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARK 219

[Close]

BLAST of Lag0011574 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-06
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 59  GAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSI 118
           G+QW I K    + +  YLK  AN W  F++   +  +   T+S +R+LL+++IL   SI
Sbjct: 146 GSQWIIRKYGSHSCRREYLKPIANVWFYFVQYSFMPISHSYTISMERMLLLYAILTEKSI 205

Query: 119 DVGKIISTEIYECWRKK 136
           +VGKII  EI+ C +KK
Sbjct: 206 NVGKIILKEIHNCAKKK 222

[Close]

BLAST of Lag0011574 vs. NCBI nr
Match: KAB2005540.1 (hypothetical protein ES319_D11G277400v1 [Gossypium barbadense])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-06
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 59  GAQWRISKTEKRTFQAAYLKSEANTWMGFIKLHLLSTTRDSTVSRDRVLLVFSILRSMSI 118
           G QW I K    + Q  YLKS    W  F++   +  +  ST+S  R+L +++IL   SI
Sbjct: 146 GPQWIIRKYRSHSCQREYLKSIGKVWFYFVRYSFMPISHSSTISMKRMLSLYAILTEKSI 205

Query: 119 DVGKIISTEIYECWRKK 136
           +VGKII  EI++C +KK
Sbjct: 206 NVGKIILKEIHDCAKKK 222

The following BLAST results are available for this feature:

BLAST of Lag0011574 vs. NCBI nr


Match Name	E-value	Identity	Description
EOY13933.1	1.1e-07	41.77	Uncharacterized protein TCM_032752 [Theobroma cacao]	[more]
EOY08849.1	1.4e-07	40.51	Uncharacterized protein TCM_024087 [Theobroma cacao]	[more]
PON35554.1	1.9e-07	36.00	hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]	[more]
TYH88163.1	2.1e-06	40.26	hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum]	[more]
KAB2005540.1	2.7e-06	40.26	hypothetical protein ES319_D11G277400v1 [Gossypium barbadense]	[more]

BLAST of Lag0011574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011574.1	Lag0011574.1	mRNA