Lag0011568.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0011568.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr1: 27864151 .. 27864825 (+)
Sequence length492
RNA-Seq ExpressionLag0011568.1
SyntenyLag0011568.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCAGAGCTCTAAATGACTCACGTCCTTTTTTTTTCCTCTTTTTTTTCCACGCTTCCCTCTTTTTGCTTAGATGGCATCTAATGACTCTCATTCACCAATATTTTTGCTCTCAAATATCTGTAACCTAATTTCTCTGAGACTTATTCCACAAATTCTGTCCTCTGGAAATTTCAACTACAGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

mRNA sequence

ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

Coding sequence (CDS)

ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

Protein sequence

MSILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGLLLPCAK
Homology
BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

BLAST of Lag0011568.1 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

BLAST of Lag0011568.1 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.3e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0

Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKLFGF+DG+  C P+T PS+T               + V  Q NPLYE  +AKD
Sbjct: 48  AILKAHKLFGFVDGTNPC-PQTSPSTT---------------STVPPQTNPLYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008448007.11.4e-4164.10PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo][more]
XP_008448008.11.4e-4164.10PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo][more]
KAA0049700.11.4e-4164.10T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa][more]
XP_016900446.11.4e-4164.10PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo][more]
KAE8645659.15.3e-4164.10hypothetical protein Csa_020439 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 60..157
e-value: 4.0E-17
score: 62.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..46
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 3..157
NoneNo IPR availablePANTHERPTHR34222:SF48SUBFAMILY NOT NAMEDcoord: 3..157

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0011568Lag0011568gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0011568.1.exon1Lag0011568.1.exon1exon
Lag0011568.1.exon2Lag0011568.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0011568.1cds.Lag0011568.1CDS
cds.Lag0011568.1cds.Lag0011568.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0011568.1Lag0011568.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding