Lag0011568.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011568.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr1: 27864151 .. 27864825 (+)
Sequence length	492
RNA-Seq Expression	Lag0011568.1
Synteny	Lag0011568.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCAGAGCTCTAAATGACTCACGTCCTTTTTTTTTCCTCTTTTTTTTCCACGCTTCCCTCTTTTTGCTTAGATGGCATCTAATGACTCTCATTCACCAATATTTTTGCTCTCAAATATCTGTAACCTAATTTCTCTGAGACTTATTCCACAAATTCTGTCCTCTGGAAATTTCAACTACAGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

mRNA sequence

ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

Coding sequence (CDS)

ATGTCGATCTTAAAGGCTCACAAGTTGTTTGGATTTATCGATGGCTCCACTAATTGCCCTCCAAAGACGGTTCCATCATCCACCACATTGTCCTCTATATCAACGGAGACTGCAACTGAAGCACCTCATGCTCCAGTATCTTCTCAGATTAATCCACTTTATGAGAAGCGAGTTGCCAAAGATCAAGCTCTAATGACACTGATCAATGCCACTCTGTCGCCGGCAACCTTAGCCTATGTTGTTGGTTGCACATCATCCAAACAAGCCTGGGAGGTTCTTGAAAAGCACTACTCTTCGAGCTCAAGAACCAACATCGTCAATTTGAAGTCAGATCTTCAATCAATAACCAAGAAGTTAGGTGAGTCAATCGACGATTGTATTAAACGAATCAAAGAACTCAAAGATAAATTAGCTAATGTTTCTGTTATTGTGGATGGAGAGGATATTCTTATCTATGCCTTAAATGGCTTACTGTTGCCTTGTGCAAAGTGA

Protein sequence

MSILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKDQALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGESIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGLLLPCAK

Homology

[Close]

BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

[Close]

BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

[Close]

BLAST of Lag0011568.1 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

[Close]

BLAST of Lag0011568.1 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKL+GFIDG+  CPP+T  SS+T              + V  Q NP YE  +AKD
Sbjct: 48  AILKAHKLYGFIDGTNPCPPRTNNSSST--------------STVPPQSNPSYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 189

[Close]

BLAST of Lag0011568.1 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 5.3e-41
Identity = 100/156 (64.10%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 2   SILKAHKLFGFIDGSTNCPPKTVPSSTTLSSISTETATEAPHAPVSSQINPLYEKRVAKD 61
           +ILKAHKLFGF+DG+  C P+T PS+T               + V  Q NPLYE  +AKD
Sbjct: 48  AILKAHKLFGFVDGTNPC-PQTSPSTT---------------STVPPQTNPLYEDWIAKD 107

Query: 62  QALMTLINATLSPATLAYVVGCTSSKQAWEVLEKHYSSSSRTNIVNLKSDLQSITKKLGE 121
           QALMT+INATLSP  LAYVVG TSSKQ W+VL K YSS SR+N+VNLKSDLQ+I KK  E
Sbjct: 108 QALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDE 167

Query: 122 SIDDCIKRIKELKDKLANVSVIVDGEDILIYALNGL 158
           SID  IKRIKE+KDKLANVS  ++ ED+LIYALNGL
Sbjct: 168 SIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGL 187

The following BLAST results are available for this feature:

BLAST of Lag0011568.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448007.1	1.4e-41	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	1.4e-41	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	1.4e-41	64.10	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	1.4e-41	64.10	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAE8645659.1	5.3e-41	64.10	hypothetical protein Csa_020439 [Cucumis sativus]	[more]

BLAST of Lag0011568.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 60..157 e-value: 4.0E-17 score: 62.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 3..157
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 3..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0011568	Lag0011568	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0011568.1.exon1	Lag0011568.1.exon1	exon
Lag0011568.1.exon2	Lag0011568.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0011568.1	cds.Lag0011568.1	CDS
cds.Lag0011568.1	cds.Lag0011568.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0011568.1	Lag0011568.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding