Lag0004425.1 (mRNA) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGAAGAAGGGCAAGTGATTGCATGTCATAAGAAAGCCGAATGGGATGCTCAATTAACAAAAGCGAAGGAATCAGGAAAACTGGTATCGTTTTCTTGATTTTTCGGAGTCTTCATTTCTACATTTCAATTGATTCCGATGGAATTTTGGATTCTCTGGATAGATATGTTGAAGCATTTTCATGATTCCTTTCGCCTTTTCCTGTTCTGTTAGGACATTACATTGTTCGATGTTTTGGTAAAAGTCGCGATGCATTCGTTAGGGTTTCTGATCTCTTTTATAGGCTAGTTATATTCGATTTATCTGGATTGAATGATCGTGTTGAAATTGATGCTTTCGATGTTTCCTTTTTGACGTCTTCTGGAATCTTTGATTTGTATTCTTCAATCCTTCTCTGTTACTCTTTTCGTTCTCTTTTTTGTTTTTTTTTTTTAAACTTGATTATGCTATTTTGCATTGACCGAACTTGAGTGATTCTGTGTTACATGGTAGTATTCCAGTTTGTGTCCATTTTTTGTTCCTGACGTTTTTTGTTTGGTAGATTGTGGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTGCAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATTCCAGTGTCATTTTCCTGAAAGTGGACGTTGATGAATTGAATGTAAAGATATCTAAGCTTTTTTTTAATAACTCTTTCCTTTTTATTATATCATATGTCAACACTTCTGTTCCTTCAGGATATTGCTGAATACAGTAGCATGCATGCACTGGAACTGTTGTCTTTTGACTCGATCCCTGTTTTCCCCCCCTCAAACAATGGCTTCTGTTTTTCTCTGCAGACTATTGCTAAAGAGTGGGAGATTGATGCAATGCCCACGTTTGTTTTCCTGAAAGGAGGGGAAAAAATTCACAAGATTGTTGGTGCTGATAAAGTGGCGCTGTTGAAGAAAATAGAAGAGCTTAAAGCTTCAGCAGCTGCTACTTCTACTGCTTAG ATGGCTGAAGAAGGGCAAGTGATTGCATGTCATAAGAAAGCCGAATGGGATGCTCAATTAACAAAAGCGAAGGAATCAGGAAAACTGATTGTGGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTGCAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATTCCAGTGTCATTTTCCTGAAAGTGGACGTTGATGAATTGAATGATATTGCTGAATACAGTAGCATGCATGCACTGGAACTGTTGTCTTTTGACTCGATCCCTGTTTTCCCCCCCTCAAACAATGGCTTCTGTTTTTCTCTGCAGACTATTGCTAAAGAGTGGGAGATTGATGCAATGCCCACGTTTGTTTTCCTGAAAGGAGGGGAAAAAATTCACAAGATTGTTGGTGCTGATAAAGTGGCGCTGTTGAAGAAAATAGAAGAGCTTAAAGCTTCAGCAGCTGCTACTTCTACTGCTTAG ATGGCTGAAGAAGGGCAAGTGATTGCATGTCATAAGAAAGCCGAATGGGATGCTCAATTAACAAAAGCGAAGGAATCAGGAAAACTGATTGTGGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTGCAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATTCCAGTGTCATTTTCCTGAAAGTGGACGTTGATGAATTGAATGATATTGCTGAATACAGTAGCATGCATGCACTGGAACTGTTGTCTTTTGACTCGATCCCTGTTTTCCCCCCCTCAAACAATGGCTTCTGTTTTTCTCTGCAGACTATTGCTAAAGAGTGGGAGATTGATGCAATGCCCACGTTTGTTTTCCTGAAAGGAGGGGAAAAAATTCACAAGATTGTTGGTGCTGATAAAGTGGCGCTGTTGAAGAAAATAGAAGAGCTTAAAGCTTCAGCAGCTGCTACTTCTACTGCTTAG MAEEGQVIACHKKAEWDAQLTKAKESGKLIVVDFTASWCGPCRAIAPYFSELAKNHSSVIFLKVDVDELNDIAEYSSMHALELLSFDSIPVFPPSNNGFCFSLQTIAKEWEIDAMPTFVFLKGGEKIHKIVGADKVALLKKIEELKASAAATSTA Homology
BLAST of Lag0004425.1 vs. NCBI nr
Match: XP_023537338.1 (thioredoxin H-type-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 194.9 bits (494), Expect = 5.2e-46 Identity = 105/156 (67.31%), Postives = 111/156 (71.15%), Query Frame = 0
BLAST of Lag0004425.1 vs. NCBI nr
Match: XP_022951328.1 (thioredoxin H-type-like [Cucurbita moschata] >KAG6585569.1 hypothetical protein SDJN03_18302, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45 Identity = 101/155 (65.16%), Postives = 109/155 (70.32%), Query Frame = 0
BLAST of Lag0004425.1 vs. NCBI nr
Match: XP_023002551.1 (thioredoxin H-type-like [Cucurbita maxima]) HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45 Identity = 104/156 (66.67%), Postives = 110/156 (70.51%), Query Frame = 0
BLAST of Lag0004425.1 vs. NCBI nr
Match: XP_008444759.1 (PREDICTED: thioredoxin H1-like [Cucumis melo]) HSP 1 Score: 189.1 bits (479), Expect = 2.8e-44 Identity = 101/156 (64.74%), Postives = 110/156 (70.51%), Query Frame = 0
BLAST of Lag0004425.1 vs. NCBI nr
Match: XP_004152676.1 (thioredoxin H-type [Cucumis sativus] >KGN62636.1 hypothetical protein Csa_022403 [Cucumis sativus]) HSP 1 Score: 188.0 bits (476), Expect = 6.3e-44 Identity = 100/157 (63.69%), Postives = 110/157 (70.06%), Query Frame = 0
BLAST of Lag0004425.1 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29 Identity = 69/142 (48.59%), Postives = 84/142 (59.15%), Query Frame = 0
BLAST of Lag0004425.1 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28 Identity = 68/154 (44.16%), Postives = 92/154 (59.74%), Query Frame = 0
BLAST of Lag0004425.1 vs. ExPASy Swiss-Prot
Match: A2YIW7 (Thioredoxin H-type OS=Oryza sativa subsp. indica OX=39946 GN=TRXH PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.0e-28 Identity = 68/154 (44.16%), Postives = 92/154 (59.74%), Query Frame = 0
BLAST of Lag0004425.1 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2) HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28 Identity = 71/142 (50.00%), Postives = 83/142 (58.45%), Query Frame = 0
BLAST of Lag0004425.1 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.3e-27 Identity = 67/154 (43.51%), Postives = 88/154 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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