Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
mRNA sequence
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
Coding sequence (CDS)
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG
Protein sequence
MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Homology
BLAST of Lag0000979.1 vs. NCBI nr
Match:
KAG5222336.1 (Vacuolar protein sorting-associated protein [Salix suchowensis])
HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 142/152 (93.42%), Postives = 146/152 (96.05%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
MVESVGG RGGGLPCGGCQRFESAYLQLV+L TKLYDSTQF RFGSSIYD SFMDVDKI
Sbjct: 85 MVESVGGPRGGGLPCGGCQRFESAYLQLVSLVGTKLYDSTQFFRFGSSIYDLSFMDVDKI 144
Query: 61 LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQP 120
LPFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIGQP
Sbjct: 145 LPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQP 204
Query: 121 FKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 153
FKLL NPWAGKRQPGELKHLS+QRKRKQKRFP
Sbjct: 205 FKLLPNPWAGKRQPGELKHLSNQRKRKQKRFP 236
BLAST of Lag0000979.1 vs. NCBI nr
Match:
KAF7117209.1 (hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii])
HSP 1 Score: 285.0 bits (728), Expect = 3.7e-73
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0
Query: 6 GGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPFSS 65
G LRGGGLPCGGCQRFESAYLQLVNLADTKLYDST+F RFG SIYD SFMDVDKILPFSS
Sbjct: 35 GDLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTEFFRFGGSIYDLSFMDVDKILPFSS 94
Query: 66 TLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKLLL 125
TLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+ RSGDSRIGQPF+LLL
Sbjct: 95 TLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKHRSGDSRIGQPFELLL 154
Query: 126 NPWAGKRQPGELKHLSSQRKRKQKRFP 153
NPWA KRQPGELKHLSSQRKRKQKRFP
Sbjct: 155 NPWADKRQPGELKHLSSQRKRKQKRFP 181
BLAST of Lag0000979.1 vs. NCBI nr
Match:
OVA05688.1 (hypothetical protein BVC80_4285g1 [Macleaya cordata])
HSP 1 Score: 267.3 bits (682), Expect = 8.0e-68
Identity = 128/138 (92.75%), Postives = 131/138 (94.93%), Query Frame = 0
Query: 4 SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPF 63
S GGLRGGGLPCGGCQRFESAYLQLVNLADTK+YDSTQF RFGSSIYD SFMDVDKIL F
Sbjct: 361 SRGGLRGGGLPCGGCQRFESAYLQLVNLADTKVYDSTQFFRFGSSIYDLSFMDVDKILLF 420
Query: 64 SSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKL 123
SSTLGWHSLKV GEVQTRKGLRWIPRHPETRKGV SDEMLRGVEN+ RSGDSRIGQPF+L
Sbjct: 421 SSTLGWHSLKVNGEVQTRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSRIGQPFEL 480
Query: 124 LLNPWAGKRQPGELKHLS 142
LLNPWAGKRQPGELKHLS
Sbjct: 481 LLNPWAGKRQPGELKHLS 498
BLAST of Lag0000979.1 vs. NCBI nr
Match:
KAG7528872.1 (hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypothetical protein ISN44_Un153g000180 [Arabidopsis suecica] >KAG7529053.1 hypothetical protein ISN45_Un101g000060 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7529068.1 hypothetical protein ISN45_Un101g000220 [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDSTQF RFGSSIYDFSFMDVDKI
Sbjct: 126 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 185
Query: 61 LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQ 120
PFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIG+
Sbjct: 186 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGE 244
BLAST of Lag0000979.1 vs. NCBI nr
Match:
CAA7013176.1 (unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein product [Microthlaspi erraticum] >CAA7014162.1 unnamed protein product [Microthlaspi erraticum] >CAA7019110.1 unnamed protein product [Microthlaspi erraticum] >CAA7022551.1 unnamed protein product [Microthlaspi erraticum])
HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDSTQF RFGSSIYDFSFMDVDKI
Sbjct: 1 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 60
Query: 61 LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQ 120
PFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIG+
Sbjct: 61 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGE 119
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG5222336.1 | 1.0e-75 | 93.42 | Vacuolar protein sorting-associated protein [Salix suchowensis] | [more] |
KAF7117209.1 | 3.7e-73 | 93.20 | hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii] | [more] |
OVA05688.1 | 8.0e-68 | 92.75 | hypothetical protein BVC80_4285g1 [Macleaya cordata] | [more] |
KAG7528872.1 | 1.7e-57 | 94.12 | hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypo... | [more] |
CAA7013176.1 | 1.7e-57 | 94.12 | unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein p... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Lag0000979 | Lag0000979 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lag0000979.1.exon1 | Lag0000979.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.Lag0000979.1 | cds.Lag0000979.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Lag0000979.1 | Lag0000979.1-protein | polypeptide |