Lag0000979 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000979
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr4: 21635528 .. 21635986 (+)
RNA-Seq Expression	Lag0000979
Synteny	Lag0000979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG

mRNA sequence

ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG

Coding sequence (CDS)

ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCAATTTTGCCGATTCGGCAGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTCAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATCAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAG

Protein sequence

MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP

Homology

[Close]

BLAST of Lag0000979 vs. NCBI nr
Match: KAG5222336.1 (Vacuolar protein sorting-associated protein [Salix suchowensis])

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75
Identity = 142/152 (93.42%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
           MVESVGG RGGGLPCGGCQRFESAYLQLV+L  TKLYDSTQF RFGSSIYD SFMDVDKI
Sbjct: 85  MVESVGGPRGGGLPCGGCQRFESAYLQLVSLVGTKLYDSTQFFRFGSSIYDLSFMDVDKI 144

Query: 61  LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQP 120
           LPFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIGQP
Sbjct: 145 LPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQP 204

Query: 121 FKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 153
           FKLL NPWAGKRQPGELKHLS+QRKRKQKRFP
Sbjct: 205 FKLLPNPWAGKRQPGELKHLSNQRKRKQKRFP 236

[Close]

BLAST of Lag0000979 vs. NCBI nr
Match: KAF7117209.1 (hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii])

HSP 1 Score: 285.0 bits (728), Expect = 3.7e-73
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 6   GGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPFSS 65
           G LRGGGLPCGGCQRFESAYLQLVNLADTKLYDST+F RFG SIYD SFMDVDKILPFSS
Sbjct: 35  GDLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTEFFRFGGSIYDLSFMDVDKILPFSS 94

Query: 66  TLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKLLL 125
           TLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+ RSGDSRIGQPF+LLL
Sbjct: 95  TLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKHRSGDSRIGQPFELLL 154

Query: 126 NPWAGKRQPGELKHLSSQRKRKQKRFP 153
           NPWA KRQPGELKHLSSQRKRKQKRFP
Sbjct: 155 NPWADKRQPGELKHLSSQRKRKQKRFP 181

[Close]

BLAST of Lag0000979 vs. NCBI nr
Match: OVA05688.1 (hypothetical protein BVC80_4285g1 [Macleaya cordata])

HSP 1 Score: 267.3 bits (682), Expect = 8.0e-68
Identity = 128/138 (92.75%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 4   SVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKILPF 63
           S GGLRGGGLPCGGCQRFESAYLQLVNLADTK+YDSTQF RFGSSIYD SFMDVDKIL F
Sbjct: 361 SRGGLRGGGLPCGGCQRFESAYLQLVNLADTKVYDSTQFFRFGSSIYDLSFMDVDKILLF 420

Query: 64  SSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQPFKL 123
           SSTLGWHSLKV GEVQTRKGLRWIPRHPETRKGV SDEMLRGVEN+ RSGDSRIGQPF+L
Sbjct: 421 SSTLGWHSLKVNGEVQTRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSRIGQPFEL 480

Query: 124 LLNPWAGKRQPGELKHLS 142
           LLNPWAGKRQPGELKHLS
Sbjct: 481 LLNPWAGKRQPGELKHLS 498

[Close]

BLAST of Lag0000979 vs. NCBI nr
Match: KAG7528872.1 (hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypothetical protein ISN44_Un153g000180 [Arabidopsis suecica] >KAG7529053.1 hypothetical protein ISN45_Un101g000060 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7529068.1 hypothetical protein ISN45_Un101g000220 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
           MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDSTQF RFGSSIYDFSFMDVDKI
Sbjct: 126 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 185

Query: 61  LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQ 120
            PFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIG+
Sbjct: 186 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGE 244

[Close]

BLAST of Lag0000979 vs. NCBI nr
Match: CAA7013176.1 (unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein product [Microthlaspi erraticum] >CAA7014162.1 unnamed protein product [Microthlaspi erraticum] >CAA7019110.1 unnamed protein product [Microthlaspi erraticum] >CAA7022551.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFCRFGSSIYDFSFMDVDKI 60
           MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDSTQF RFGSSIYDFSFMDVDKI
Sbjct: 1   MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 60

Query: 61  LPFSSTLGWHSLKVQGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENQRRSGDSRIGQ 120
            PFSSTLGWHSLKV+GEVQTRKGLRWIPRHPETRKGVVSDEMLRGVEN+RRSGDSRIG+
Sbjct: 61  FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGE 119

The following BLAST results are available for this feature:

BLAST of Lag0000979 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5222336.1	1.0e-75	93.42	Vacuolar protein sorting-associated protein [Salix suchowensis]	[more]
KAF7117209.1	3.7e-73	93.20	hypothetical protein RHSIM_RhsimPtG0005300 [Rhododendron simsii]	[more]
OVA05688.1	8.0e-68	92.75	hypothetical protein BVC80_4285g1 [Macleaya cordata]	[more]
KAG7528872.1	1.7e-57	94.12	hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica] >KAG7528886.1 hypo...	[more]
CAA7013176.1	1.7e-57	94.12	unnamed protein product [Microthlaspi erraticum] >CAA7013181.1 unnamed protein p...	[more]

BLAST of Lag0000979 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	PANTHER	PTHR34890:SF13	YCF68 PROTEIN	coord: 6..97
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 6..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000979.1	Lag0000979.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast