Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA
mRNA sequence
ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA
Coding sequence (CDS)
ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA
Protein sequence
MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Homology
BLAST of IVF0025975.1 vs. ExPASy TrEMBL
Match:
A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)
HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 174
YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 516
BLAST of IVF0025975.1 vs. ExPASy TrEMBL
Match:
A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)
HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 174
YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 319
BLAST of IVF0025975.1 vs. ExPASy TrEMBL
Match:
A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)
HSP 1 Score: 248.1 bits (632), Expect = 2.8e-62
Identity = 129/163 (79.14%), Postives = 138/163 (84.66%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
YEVP VPKQSDEQQQQE + + +NQ EI +V
Sbjct: 267 YEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRV 309
BLAST of IVF0025975.1 vs. ExPASy TrEMBL
Match:
A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)
HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 127/163 (77.91%), Postives = 138/163 (84.66%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 266
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
YEVP VP+QS+E QQQE + + +NQ EI +V
Sbjct: 267 YEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 309
BLAST of IVF0025975.1 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 3.1e-61
Identity = 126/163 (77.30%), Postives = 137/163 (84.05%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG
Sbjct: 826 MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 885
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 886 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 945
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
Y+VP VP+QSDEQQQQE + + +N EI +V
Sbjct: 946 YKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRV 988
BLAST of IVF0025975.1 vs. NCBI nr
Match:
TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 342 bits (877), Expect = 2.79e-116
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 173
YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 319
BLAST of IVF0025975.1 vs. NCBI nr
Match:
KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 342 bits (877), Expect = 1.49e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463
Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 173
YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 516
BLAST of IVF0025975.1 vs. NCBI nr
Match:
XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])
HSP 1 Score: 246 bits (627), Expect = 2.33e-79
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG
Sbjct: 63 MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 122
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 123 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 182
Query: 121 YEVPTTVPKQSDEQQQQE 138
Y+VP VP+QSDEQQQQE
Sbjct: 183 YKVPAAVPEQSDEQQQQE 200
BLAST of IVF0025975.1 vs. NCBI nr
Match:
KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 248 bits (633), Expect = 4.11e-79
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266
Query: 121 YEVPTTVPKQSDEQQQQE 138
YEVP VPKQSDEQQQQE
Sbjct: 267 YEVPAAVPKQSDEQQQQE 284
BLAST of IVF0025975.1 vs. NCBI nr
Match:
XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])
HSP 1 Score: 246 bits (627), Expect = 4.46e-79
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0
Query: 1 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG
Sbjct: 83 MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 142
Query: 61 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 143 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 202
Query: 121 YEVPTTVPKQSDEQQQQE 138
Y+VP VP+QSDEQQQQE
Sbjct: 203 YKVPAAVPEQSDEQQQQE 220
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T6Q6 | 6.3e-91 | 100.00 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3CHF6 | 6.3e-91 | 100.00 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5A7U5S8 | 2.8e-62 | 79.14 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3D5R5 | 1.8e-61 | 77.91 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3DUI1 | 3.1e-61 | 77.30 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
Match Name | E-value | Identity | Description | |
TYK09816.1 | 2.79e-116 | 100.00 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
KAA0037866.1 | 1.49e-113 | 100.00 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
XP_016900498.1 | 2.33e-79 | 88.41 | PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... | [more] |
KAA0051233.1 | 4.11e-79 | 89.86 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
XP_008449513.1 | 4.46e-79 | 88.41 | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... | [more] |
Match Name | E-value | Identity | Description | |