IVF0025975 (gene) Melon (IVF77) v1

Overview


Name	IVF0025975
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr04: 11570857 .. 11571378 (-)
RNA-Seq Expression	IVF0025975
Synteny	IVF0025975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA

mRNA sequence

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA

Coding sequence (CDS)

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGA

Protein sequence

MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE

Homology

[Close]

BLAST of IVF0025975 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 174
           YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 516

[Close]

BLAST of IVF0025975 vs. ExPASy TrEMBL
Match: A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.3e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 174
           YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 319

[Close]

BLAST of IVF0025975 vs. ExPASy TrEMBL
Match: A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.8e-62
Identity = 129/163 (79.14%), Postives = 138/163 (84.66%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
           YEVP  VPKQSDEQQQQE        + +   +NQ EI   +V
Sbjct: 267 YEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRV 309

[Close]

BLAST of IVF0025975 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 127/163 (77.91%), Postives = 138/163 (84.66%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
           YEVP  VP+QS+E QQQE        + +   +NQ EI   +V
Sbjct: 267 YEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRV 309

[Close]

BLAST of IVF0025975 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.1e-61
Identity = 126/163 (77.30%), Postives = 137/163 (84.05%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG 
Sbjct: 826 MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 885

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 886 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 945

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
           Y+VP  VP+QSDEQQQQE        + +   +N  EI   +V
Sbjct: 946 YKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRV 988

[Close]

BLAST of IVF0025975 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (877), Expect = 2.79e-116
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 147 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 206

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 207 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 266

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 173
           YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 267 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 319

[Close]

BLAST of IVF0025975 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (877), Expect = 1.49e-113
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT
Sbjct: 344 MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 403

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY
Sbjct: 404 TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 463

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 173
           YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE
Sbjct: 464 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFFFE 516

[Close]

BLAST of IVF0025975 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 246 bits (627), Expect = 2.33e-79
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG 
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 122

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 123 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 182

Query: 121 YEVPTTVPKQSDEQQQQE 138
           Y+VP  VP+QSDEQQQQE
Sbjct: 183 YKVPAAVPEQSDEQQQQE 200

[Close]

BLAST of IVF0025975 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (633), Expect = 4.11e-79
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFGT
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266

Query: 121 YEVPTTVPKQSDEQQQQE 138
           YEVP  VPKQSDEQQQQE
Sbjct: 267 YEVPAAVPKQSDEQQQQE 284

[Close]

BLAST of IVF0025975 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 246 bits (627), Expect = 4.46e-79
Identity = 122/138 (88.41%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG 
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 142

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 143 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 202

Query: 121 YEVPTTVPKQSDEQQQQE 138
           Y+VP  VP+QSDEQQQQE
Sbjct: 203 YKVPAAVPEQSDEQQQQE 220

The following BLAST results are available for this feature:

BLAST of IVF0025975 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6Q6	6.3e-91	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CHF6	6.3e-91	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7U5S8	2.8e-62	79.14	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3D5R5	1.8e-61	77.91	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	3.1e-61	77.30	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of IVF0025975 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09816.1	2.79e-116	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0037866.1	1.49e-113	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
XP_016900498.1	2.33e-79	88.41	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
KAA0051233.1	4.11e-79	89.86	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
XP_008449513.1	4.46e-79	88.41	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]

BLAST of IVF0025975 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025975.1	IVF0025975.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding