IVF0023723.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK Homology
BLAST of IVF0023723.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13 Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11 Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08 Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07 Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy TrEMBL
Match: A0A5A7T3Z0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002060 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy TrEMBL
Match: A0A2I0X7V3 (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca006472 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29 Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy TrEMBL
Match: A0A803QP41 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 4.2e-29 Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy TrEMBL
Match: A0A2I0X132 (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013044 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 5.5e-29 Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of IVF0023723.1 vs. ExPASy TrEMBL
Match: A0A6D2I8S0 (Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10304 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29 Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of IVF0023723.1 vs. NCBI nr
Match: KAA0036836.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ95903.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]) HSP 1 Score: 212 bits (539), Expect = 2.31e-66 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of IVF0023723.1 vs. NCBI nr
Match: CAA7023069.1 (unnamed protein product [Microthlaspi erraticum]) HSP 1 Score: 136 bits (342), Expect = 6.64e-37 Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of IVF0023723.1 vs. NCBI nr
Match: PKU67757.1 (hypothetical protein MA16_Dca013787 [Dendrobium catenatum]) HSP 1 Score: 131 bits (330), Expect = 1.86e-36 Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0
BLAST of IVF0023723.1 vs. NCBI nr
Match: CAA7022295.1 (unnamed protein product [Microthlaspi erraticum] >CAA7047287.1 unnamed protein product [Microthlaspi erraticum]) HSP 1 Score: 130 bits (327), Expect = 1.87e-35 Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0
BLAST of IVF0023723.1 vs. NCBI nr
Match: PKU59625.1 (putative mitochondrial protein [Dendrobium catenatum]) HSP 1 Score: 129 bits (323), Expect = 3.58e-35 Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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