IVF0023723 (gene) Melon (IVF77) v1

Overview
NameIVF0023723
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationchr04: 7740714 .. 7741031 (+)
RNA-Seq ExpressionIVF0023723
SyntenyIVF0023723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

mRNA sequence

ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

Coding sequence (CDS)

ATGATCCAAGTTCCTGTATTGGCTTTACCAAATTTCAAGAAGCCCTTTGTGGTCGAGACAGATGCCTCCGAAGTCGGGATGGGGGCTATCATGGAGAATAAACGGCCACTTGAGTTTTTCAGCCAAGCATTAGCACCTCCCCACAAGTTCAAGGCAGTGTACGAGCATGAACTGACGGCTATTGTGTTTGCTATTCGAAAATGGCGACCATATTTATTGGGTAGGAGGTTTATTGTTGGCACCGATCAGAAAAGTTTGAAGTTTTTGCTCAAACAACGGGTAATAGCAAGGGAACAGCAGCGCTGGATCACCAAGTAG

Protein sequence

MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK
Homology
BLAST of IVF0023723 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELT 60
           +I+ P+L LP+F+K FV+ TDAS + +GA++ +N  P+ F S+ L       +  E EL 
Sbjct: 493 IIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELL 552

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRW 103
           AIV+A + +R YLLGR+F++ +D + L++L   +    + +RW
Sbjct: 553 AIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERW 595

BLAST of IVF0023723 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 0

Query: 5   PVLALPNFKKPFVVETDASEVGMGAIM-ENKRPLEFFSQALAPPHKFKAVYEHELTAIVF 64
           P+L +P+F K F + TDAS+V +GA++ ++  PL + S+ L       +  E EL AIV+
Sbjct: 498 PILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVW 557

Query: 65  AIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           A + +R YLLGR F + +D + L +L + +    +  RW  K
Sbjct: 558 ATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVK 599

BLAST of IVF0023723 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-10
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 6   VLALPNFKKPFVVETDASEVGMGAIMENK-RPLEFFSQALAPPHKFKAVYEHELTAIVFA 65
           +L  P+FKKPF + TDAS  G+GA++  + RP+   S+ L  P +  A  E EL AIV+A
Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWA 544

Query: 66  IRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW 103
           + K + +L G R I + TD + L F +  R    + +RW
Sbjct: 545 LGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRW 583

BLAST of IVF0023723 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYE 60
           +I   +L  P+F K F + TDAS+   GA++      ++ P+ + S+A       K+  E
Sbjct: 601 LINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTE 660

Query: 61  HELTAIVFAIRKWRPYLLGRRFIVGTDQKSLKFL 90
            EL AI +AI  +RPY+ G+ F V TD + L +L
Sbjct: 661 QELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYL 694

BLAST of IVF0023723 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 0

Query: 6   VLALPNFKKPFVVETDASEVGMGAIME-----NKRPLEFFSQALAPPHKFKAVYEHELTA 65
           +LA P F KPF + TDAS   +GA++        RP+ + S++L    +  A  E E+ A
Sbjct: 425 ILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484

Query: 66  IVFAIRKWRPYLLGRRFI-VGTDQKSLKFLLKQRVIAREQQRW 103
           I++++   R YL G   I V TD + L F L  R    + +RW
Sbjct: 485 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRW 527

BLAST of IVF0023723 vs. ExPASy TrEMBL
Match: A0A5A7T3Z0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002060 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA 60
           MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA
Sbjct: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA 60

Query: 61  IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK
Sbjct: 61  IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105

BLAST of IVF0023723 vs. ExPASy TrEMBL
Match: A0A2I0X7V3 (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca006472 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 67/106 (63.21%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLALPNF++ FVVETDAS  G+GA+ M+N RP+ +FSQ L+   + K+VYE EL 
Sbjct: 436 MTTVPVLALPNFEQSFVVETDASGYGLGAVLMQNHRPVAYFSQVLSARARLKSVYERELM 495

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIV AI+KWRPYLLGR FIV TDQ+SLK+LL+QR++  E QRW++K
Sbjct: 496 AIVLAIQKWRPYLLGRHFIVRTDQRSLKYLLEQRMVTEEHQRWLSK 541

BLAST of IVF0023723 vs. ExPASy TrEMBL
Match: A0A803QP41 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.2e-29
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VP+LALP+F KPFVVETDAS  G+GA+ M+  RP+ +FSQ L P  + K++YE EL 
Sbjct: 1   MTTVPILALPDFTKPFVVETDASGYGLGAVLMQEGRPIAYFSQVLKPRARLKSIYEKELM 60

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIV A+ KWRPYLLGRRF+V TDQ+SLKFLL+QR++  E Q+W+ K
Sbjct: 61  AIVLAVLKWRPYLLGRRFVVRTDQQSLKFLLEQRLVTPEHQKWLVK 106

BLAST of IVF0023723 vs. ExPASy TrEMBL
Match: A0A2I0X132 (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013044 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.5e-29
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1    MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
            M+  PVLALPNFK+  VVETDAS +G+GA+ M+  RP+ F+SQ L+   K K+VYE EL 
Sbjct: 1001 MVSAPVLALPNFKQQLVVETDASGLGLGAVLMQQGRPIAFYSQVLSGRAKLKSVYERELM 1060

Query: 61   AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
            AIV AI+KWRPYLLGRRF+V TDQ+SLK+LL+QR++  E QRW++K
Sbjct: 1061 AIVKAIQKWRPYLLGRRFLVRTDQRSLKYLLEQRMVTEEHQRWLSK 1106

BLAST of IVF0023723 vs. ExPASy TrEMBL
Match: A0A6D2I8S0 (Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10304 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M+  PVLALPNF++ FVVE+DAS  G+GA+ M+N+RP+ FFS  L+   + K +YE EL 
Sbjct: 1   MMSAPVLALPNFEEQFVVESDASGYGLGAVLMQNQRPIGFFSSGLSAREQIKPIYERELM 60

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 106
           AIV AI+KWRPYLLGRRF+V TDQKSLKFLL+QR ++ + Q+W+TK
Sbjct: 61  AIVLAIQKWRPYLLGRRFLVHTDQKSLKFLLEQRKVSMDYQKWLTK 106

BLAST of IVF0023723 vs. NCBI nr
Match: KAA0036836.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ95903.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (539), Expect = 2.31e-66
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA 60
           MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA
Sbjct: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAIMENKRPLEFFSQALAPPHKFKAVYEHELTA 60

Query: 61  IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105
           IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK
Sbjct: 61  IVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105

BLAST of IVF0023723 vs. NCBI nr
Match: CAA7023069.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 136 bits (342), Expect = 6.64e-37
Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M+  PVLALPNF++ FVVE+DAS  G+GA+ M+N+RP+ FFS  L+   + K +YE EL 
Sbjct: 1   MMSAPVLALPNFEEQFVVESDASGYGLGAVLMQNQRPIGFFSSGLSAREQIKPIYERELM 60

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105
           AIV AI+KWRPYLLGRRF+V TDQKSLKFLL+QR ++ + Q+W+TK
Sbjct: 61  AIVLAIQKWRPYLLGRRFLVHTDQKSLKFLLEQRKVSMDYQKWLTK 106

BLAST of IVF0023723 vs. NCBI nr
Match: PKU67757.1 (hypothetical protein MA16_Dca013787 [Dendrobium catenatum])

HSP 1 Score: 131 bits (330), Expect = 1.86e-36
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  +PVLALP+F + F+V+TDAS  G+GA+ M+N+RP+ +F Q LA   + K+VYE EL 
Sbjct: 1   MTTIPVLALPDFTQTFIVKTDASGYGLGAVLMQNRRPIPYFRQVLAARARLKSVYERELM 60

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105
            IV AI KWRPYLLGR FIV TDQ+SLK+LL+QR++  E QRW++K
Sbjct: 61  VIVLAIHKWRPYLLGRHFIVRTDQRSLKYLLEQRMVTEEHQRWLSK 106

BLAST of IVF0023723 vs. NCBI nr
Match: CAA7022295.1 (unnamed protein product [Microthlaspi erraticum] >CAA7047287.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 130 bits (327), Expect = 1.87e-35
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M+  PVLALP+F + FVVE+DAS  G+GA+ M+N+RP+ +FS  L    + K +YE EL 
Sbjct: 19  MMTAPVLALPDFSETFVVESDASRYGVGAVLMQNQRPIAYFSSGLTDKEQIKPIYERELM 78

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105
           AIV AI+KWRPYLLGR+FIV TDQKSLKFL++QR ++ E Q+W+ K
Sbjct: 79  AIVLAIQKWRPYLLGRKFIVHTDQKSLKFLMEQRELSMEYQKWLIK 124

BLAST of IVF0023723 vs. NCBI nr
Match: PKU59625.1 (putative mitochondrial protein [Dendrobium catenatum])

HSP 1 Score: 129 bits (323), Expect = 3.58e-35
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MIQVPVLALPNFKKPFVVETDASEVGMGAI-MENKRPLEFFSQALAPPHKFKAVYEHELT 60
           M  VPVLALP+F + F+VETDAS  G+ A+ M++ +P+ +FSQ L    + K VYE EL 
Sbjct: 79  MTTVPVLALPDFTQAFIVETDASGYGLEAVLMQSHKPIAYFSQVLTARARLKYVYERELM 138

Query: 61  AIVFAIRKWRPYLLGRRFIVGTDQKSLKFLLKQRVIAREQQRWITK 105
           AIV AI+KWRPYLLGR FIV TDQ+SLK+LL+QR++ +E QRW++K
Sbjct: 139 AIVLAIQKWRPYLLGRHFIVWTDQRSLKYLLQQRIVTKEHQRWLSK 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P208251.1e-1337.86Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P043232.2e-1136.27Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P104011.9e-1039.39Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
P103941.3e-0835.11Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
Q8I7P91.1e-0734.95Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Match NameE-valueIdentityDescription
A0A5A7T3Z01.0e-51100.00Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A2I0X7V32.5e-2963.21Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0064... [more]
A0A803QP414.2e-2961.32Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2I0X1325.5e-2962.26Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0130... [more]
A0A6D2I8S07.1e-2961.32Integrase catalytic domain-containing protein OS=Microthlaspi erraticum OX=16854... [more]
Match NameE-valueIdentityDescription
KAA0036836.12.31e-66100.00Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ95903.1 Retrotransp... [more]
CAA7023069.16.64e-3761.32unnamed protein product [Microthlaspi erraticum][more]
PKU67757.11.86e-3658.49hypothetical protein MA16_Dca013787 [Dendrobium catenatum][more]
CAA7022295.11.87e-3558.49unnamed protein product [Microthlaspi erraticum] >CAA7047287.1 unnamed protein p... [more]
PKU59625.13.58e-3558.49putative mitochondrial protein [Dendrobium catenatum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 11..104
e-value: 6.5E-25
score: 87.5
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 7..94
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 7..94
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 17..105
e-value: 4.09425E-32
score: 107.193
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023723.1IVF0023723.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006545 glycine biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0006567 threonine catabolic process
cellular_component GO:0005829 cytosol
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0008732 L-allo-threonine aldolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity