IVF0022762.1 (mRNA) Melon (IVF77) v1

Overview
NameIVF0022762.1
TypemRNA
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr10: 15919079 .. 15919249 (-)
Sequence length171
RNA-Seq ExpressionIVF0022762.1
SyntenyIVF0022762.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

mRNA sequence

ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

Coding sequence (CDS)

ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

Protein sequence

MAKQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTEQRWPIVPTRSWIRRSKPDQS
Homology
[Close]
BLAST of IVF0022762.1 vs. NCBI nr
Match: KAA0065775.1 (hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515.1 hypothetical protein E5676_scaffold546G001640 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 6.31e-05
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 3   KQNEDVRSFLLEVGSNGKSPTTPSRNQTAD 32
           K+NED RSFLL VGS+GKS   PSRNQ AD
Sbjct: 97  KENEDARSFLLRVGSDGKSLIAPSRNQIAD 126

[Close]
BLAST of IVF0022762.1 vs. NCBI nr
Match: KAA0055593.1 (uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK01332.1 uncharacterized protein E5676_scaffold29G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 1.30e-04
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 0 

Query: 2   AKQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTE 36
           AKQNED +S LL VG +GKS   PSRNQ  DG+ E
Sbjct: 131 AKQNEDAQSLLLGVGFDGKSSIAPSRNQITDGEAE 165

[Close]
BLAST of IVF0022762.1 vs. NCBI nr
Match: TYK16412.1 (uncharacterized protein E5676_scaffold21G002070 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 1.63e-04
Identity = 23/34 (67.65%), Postives = 24/34 (70.59%), Query Frame = 0 

Query: 3   KQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTE 36
           KQ+ D RSFLLEV S  KSP  PSRNQ  DGK E
Sbjct: 123 KQSRDARSFLLEVESYDKSPIFPSRNQIIDGKIE 156

The following BLAST results are available for this feature:
BLAST of IVF0022762.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022762.1 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0022762.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065775.16.31e-0573.33hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515... [more]
KAA0055593.11.30e-0462.86uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK0... [more]
TYK16412.11.63e-0467.65uncharacterized protein E5676_scaffold21G002070 [Cucumis melo var. makuwa][more]
BLAST of IVF0022762.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
IVF0022762IVF0022762gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0022762.1-exonIVF0022762.1-exon-chr10:15919079..15919249exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
IVF0022762.1-cdsIVF0022762.1-cds-chr10:15919079..15919249CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
IVF0022762.1IVF0022762.1-proteinpolypeptide