IVF0022762 (gene) Melon (IVF77) v1

Overview


Name	IVF0022762
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 15919079 .. 15919249 (-)
RNA-Seq Expression	IVF0022762
Synteny	IVF0022762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

mRNA sequence

ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

Coding sequence (CDS)

ATGGCGAAGCAGAACGAAGATGTCCGATCGTTTCTACTTGAGGTTGGATCCAACGGCAAAAGCCCAACCACCCCTAGTAGGAATCAGACCGCTGATGGCAAAACAGAACAAAGATGGCCGATCGTTCCTACTAGGAGTTGGATCCGACGGTCAAAGCCCGATCAGTCTTAG

Protein sequence

MAKQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTEQRWPIVPTRSWIRRSKPDQS

Homology

[Close]

BLAST of IVF0022762 vs. NCBI nr
Match: KAA0065775.1 (hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515.1 hypothetical protein E5676_scaffold546G001640 [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 6.31e-05
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 3   KQNEDVRSFLLEVGSNGKSPTTPSRNQTAD 32
           K+NED RSFLL VGS+GKS   PSRNQ AD
Sbjct: 97  KENEDARSFLLRVGSDGKSLIAPSRNQIAD 126

[Close]

BLAST of IVF0022762 vs. NCBI nr
Match: KAA0055593.1 (uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK01332.1 uncharacterized protein E5676_scaffold29G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 1.30e-04
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 2   AKQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTE 36
           AKQNED +S LL VG +GKS   PSRNQ  DG+ E
Sbjct: 131 AKQNEDAQSLLLGVGFDGKSSIAPSRNQITDGEAE 165

[Close]

BLAST of IVF0022762 vs. NCBI nr
Match: TYK16412.1 (uncharacterized protein E5676_scaffold21G002070 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 1.63e-04
Identity = 23/34 (67.65%), Postives = 24/34 (70.59%), Query Frame = 0


Query: 3   KQNEDVRSFLLEVGSNGKSPTTPSRNQTADGKTE 36
           KQ+ D RSFLLEV S  KSP  PSRNQ  DGK E
Sbjct: 123 KQSRDARSFLLEVESYDKSPIFPSRNQIIDGKIE 156

The following BLAST results are available for this feature:

BLAST of IVF0022762 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022762 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0022762 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065775.1	6.31e-05	73.33	hypothetical protein E6C27_scaffold37G00680 [Cucumis melo var. makuwa] >TYJ96515...	[more]
KAA0055593.1	1.30e-04	62.86	uncharacterized protein E6C27_scaffold222G00750 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK16412.1	1.63e-04	67.65	uncharacterized protein E5676_scaffold21G002070 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0022762 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0022762.1	IVF0022762.1	mRNA