IVF0020843.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAAAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCAGTACCATCCAAAACTCGTTTTGTTTACTTGCATCTTCGCTCTTCTCACTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCGTCCTAGATTTCTCTTGTGAATGGAATCGTGGAATCGATATCATTGGCTTGCTCAATCGATGGAGATTTTCAGTTTTTTTGAATGAGAGCGAGTTGCAAATCGCTTAG ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGAGCGAGTTGCAAATCGCTTAG ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGAGCGAGTTGCAAATCGCTTAG MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVSELQIA Homology
BLAST of IVF0020843.1 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.0e-12 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0
BLAST of IVF0020843.1 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39 Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0
BLAST of IVF0020843.1 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39 Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0
BLAST of IVF0020843.1 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37 Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of IVF0020843.1 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30 Identity = 78/90 (86.67%), Postives = 79/90 (87.78%), Query Frame = 0
BLAST of IVF0020843.1 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30 Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = 0
BLAST of IVF0020843.1 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa]) HSP 1 Score: 168 bits (425), Expect = 4.19e-52 Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0
BLAST of IVF0020843.1 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus]) HSP 1 Score: 162 bits (411), Expect = 5.73e-50 Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0
BLAST of IVF0020843.1 vs. NCBI nr
Match: KAE8647547.1 (hypothetical protein Csa_002974 [Cucumis sativus]) HSP 1 Score: 162 bits (410), Expect = 1.30e-49 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0
BLAST of IVF0020843.1 vs. NCBI nr
Match: XP_038882165.1 (protein SKIP34 [Benincasa hispida]) HSP 1 Score: 152 bits (384), Expect = 1.35e-45 Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 0
BLAST of IVF0020843.1 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata]) HSP 1 Score: 140 bits (352), Expect = 5.88e-41 Identity = 78/90 (86.67%), Postives = 79/90 (87.78%), Query Frame = 0
BLAST of IVF0020843.1 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.9 bits (180), Expect = 7.3e-14 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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