IVF0020843 (gene) Melon (IVF77) v1

Overview


Name	IVF0020843
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein SKIP34
Location	chr08: 4654286 .. 4654817 (-)
RNA-Seq Expression	IVF0020843
Synteny	IVF0020843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGGTTCGTCTCCTCTCCCCTGTATCTCGAAAATAAAAATTCCTCTTCGCCGTCGGTGTCTATAATTTTAGCAGTACCATCCAAAACTCGTTTTGTTTACTTGCATCTTCGCTCTTCTCACTCTCAATCCTCGTAGATTGTAATCGCCACCAAATGTATGGATTTATTCGTCCTAGATTTCTCTTGTGAATGGAATCGTGGAATCGATATCATTGGCTTGCTCAATCGATGGAGATTTTCAGTTTTTTTGAATGAGAGCGAGTTGCAAATCGCTTAG

mRNA sequence

ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGAGCGAGTTGCAAATCGCTTAG

Coding sequence (CDS)

ATGTGTAACGGCCACCACCGACCATTGTTCAGAGGTAGCCCTCCTCCATACCAGACCTCCGTACCGGAAAACGGCGCCGCATCCGTTGTGGACAACCTACGGGGCCGATTAGAAGAAACCGAGTTGCGGCTGGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAAATGAAACGGTTAGTATCTGTGATGGAGATCCTCGAGAACTACCTGAAACGGCAGTACAGCGACCGTCAAGAATATGTGAGCGAGTTGCAAATCGCTTAG

Protein sequence

MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYSDRQEYVSELQIA

Homology

[Close]

BLAST of IVF0020843 vs. ExPASy Swiss-Prot
Match: Q8GWU7 (Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-12
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKR VSVMEI+E +L+R++ ++++ ++ L
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARL 87

[Close]

BLAST of IVF0020843 vs. ExPASy TrEMBL
Match: A0A5D3CN14 (Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003300 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKRLVSVMEILENYLKRQYSDRQEYV  L
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. ExPASy TrEMBL
Match: A0A1S3B1B8 (protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKRLVSVMEILENYLKRQYSDRQEYV  L
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. ExPASy TrEMBL
Match: A0A0A0KIR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKRLVSVMEILENYLKRQYSDRQEYV  L
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. ExPASy TrEMBL
Match: A0A6J1GF20 (protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-30
Identity = 78/90 (86.67%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGA-ASVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MCNGHHR LFRGS  P QTSVPENG  ASVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          EMKRLVSVMEILENYLKR+YSDRQEYV  L
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRL 90

[Close]

BLAST of IVF0020843 vs. ExPASy TrEMBL
Match: A0A6J1IV54 (protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-30
Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS  P QTSVPENG ASVVDNLRGRL ETE RLAQVRAREA LSR+LEE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGDASVVDNLRGRLAETESRLAQVRAREAALSRILEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKRLVSVMEIL+NYLKR+Y DRQEYV  L
Sbjct: 61 MKRLVSVMEILKNYLKRRYRDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. NCBI nr
Match: XP_008440533.1 (PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis melo var. makuwa] >TYK12742.1 protein SKIP34 [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 4.19e-52
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 89
          MKRLVSVMEILENYLKRQYSDRQEYV  L
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. NCBI nr
Match: XP_011657944.1 (protein SKIP34 [Cucumis sativus])

HSP 1 Score: 162 bits (411), Expect = 5.73e-50
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 89
          MKRLVSVMEILENYLKRQYSDRQEYV  L
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYVVRL 89

[Close]

BLAST of IVF0020843 vs. NCBI nr
Match: KAE8647547.1 (hypothetical protein Csa_002974 [Cucumis sativus])

HSP 1 Score: 162 bits (410), Expect = 1.30e-49
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHRPLFRGS PPYQTSVPENGA SVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRPLFRGSLPPYQTSVPENGAVSVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYV 86
          MKRLVSVMEILENYLKRQYSDRQEYV
Sbjct: 61 MKRLVSVMEILENYLKRQYSDRQEYV 86

[Close]

BLAST of IVF0020843 vs. NCBI nr
Match: XP_038882165.1 (protein SKIP34 [Benincasa hispida])

HSP 1 Score: 152 bits (384), Expect = 1.35e-45
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MCNGHHR LFRGS  PYQ S+PENG ASVVDNLRGRLEETELRLAQVRAREAELSRLLEE
Sbjct: 1  MCNGHHRSLFRGSLSPYQNSIPENGDASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 89
          MKRLVSVMEILENYLKRQY+DRQEYV  +
Sbjct: 61 MKRLVSVMEILENYLKRQYTDRQEYVKNI 89

[Close]

BLAST of IVF0020843 vs. NCBI nr
Match: XP_022950522.1 (protein SKIP34 [Cucurbita moschata])

HSP 1 Score: 140 bits (352), Expect = 5.88e-41
Identity = 78/90 (86.67%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGA-ASVVDNLRGRLEETELRLAQVRAREAELSRLLE 60
          MCNGHHR LFRGS  P QTSVPENG  ASVVDNLRGRL ETE RLAQVRAREA LSRLLE
Sbjct: 1  MCNGHHRSLFRGSISPNQTSVPENGGDASVVDNLRGRLAETESRLAQVRAREAALSRLLE 60

Query: 61 EMKRLVSVMEILENYLKRQYSDRQEYVSEL 89
          EMKRLVSVMEILENYLKR+YSDRQEYV  L
Sbjct: 61 EMKRLVSVMEILENYLKRRYSDRQEYVVRL 90

[Close]

BLAST of IVF0020843 vs. TAIR 10
Match: AT5G65495.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.3e-14
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1  MCNGHHRPLFRGSPPPYQTSVPENGAASVVDNLRGRLEETELRLAQVRAREAELSRLLEE 60
          MC GH++ L   S    ++   E+   SVVD+LR RL ETE RL + RAREAELSR LE 
Sbjct: 1  MCYGHNQSLSSRSSLRRRSHDGEDD--SVVDDLRDRLAETEARLRRARAREAELSRRLEH 60

Query: 61 MKRLVSVMEILENYLKRQYSDRQEYVSEL 90
          MKR VSVMEI+E +L+R++ ++++ ++ L
Sbjct: 61 MKRFVSVMEIIETFLERRFQEQKDRIARL 87

The following BLAST results are available for this feature:

BLAST of IVF0020843 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GWU7	1.0e-12	49.44	Protein SKIP34 OS=Arabidopsis thaliana OX=3702 GN=SKIP34 PE=1 SV=1	[more]

BLAST of IVF0020843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CN14	6.7e-39	97.75	Protein SKIP34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00330...	[more]
A0A1S3B1B8	6.7e-39	97.75	protein SKIP34 OS=Cucumis melo OX=3656 GN=LOC103484928 PE=4 SV=1	[more]
A0A0A0KIR5	2.8e-37	95.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G498950 PE=4 SV=1	[more]
A0A6J1GF20	1.9e-30	86.67	protein SKIP34 OS=Cucurbita moschata OX=3662 GN=LOC111453605 PE=4 SV=1	[more]
A0A6J1IV54	2.5e-30	84.27	protein SKIP34 OS=Cucurbita maxima OX=3661 GN=LOC111478670 PE=4 SV=1	[more]

BLAST of IVF0020843 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440533.1	4.19e-52	97.75	PREDICTED: protein SKIP34 [Cucumis melo] >KAA0036348.1 protein SKIP34 [Cucumis m...	[more]
XP_011657944.1	5.73e-50	95.51	protein SKIP34 [Cucumis sativus]	[more]
KAE8647547.1	1.30e-49	97.67	hypothetical protein Csa_002974 [Cucumis sativus]	[more]
XP_038882165.1	1.35e-45	88.76	protein SKIP34 [Benincasa hispida]	[more]
XP_022950522.1	5.88e-41	86.67	protein SKIP34 [Cucurbita moschata]	[more]

BLAST of IVF0020843 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65495.1	7.3e-14	49.44	unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020843.1	IVF0020843.1	mRNA