![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
IVF0019905.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGTTCGAAGTGGATAGCAACAATAATCAATTTTAGCTCGAATGGTTTGTAGAGGAACCCGTCCTTCTCTGATCCATTCGACATGTGCAATTTCTTTTTTGGCTATACGTTCGGCAATTTGTACTTGAATTCCCTTTGTACCCGCCTGTATTAGGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYDN Homology
BLAST of IVF0019905.1 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 6.5e-47 Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0
BLAST of IVF0019905.1 vs. ExPASy TrEMBL
Match: A0A0A0KP72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528450 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 2.1e-29 Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 0
BLAST of IVF0019905.1 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29 Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of IVF0019905.1 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28 Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0
BLAST of IVF0019905.1 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16 Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 0
BLAST of IVF0019905.1 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 195 bits (495), Expect = 3.06e-56 Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0
BLAST of IVF0019905.1 vs. NCBI nr
Match: KGN51408.1 (hypothetical protein Csa_007736 [Cucumis sativus]) HSP 1 Score: 136 bits (343), Expect = 7.35e-39 Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 0
BLAST of IVF0019905.1 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa]) HSP 1 Score: 137 bits (345), Expect = 4.34e-35 Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0
BLAST of IVF0019905.1 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]) HSP 1 Score: 134 bits (338), Expect = 9.06e-34 Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0
BLAST of IVF0019905.1 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus]) HSP 1 Score: 96.3 bits (238), Expect = 6.31e-21 Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|