IVF0019905 (gene) Melon (IVF77) v1

Overview
NameIVF0019905
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGlial fibrillary acidic protein-like
Locationtig00000607_ERROPOS641385+: 239453 .. 239961 (-)
RNA-Seq ExpressionIVF0019905
SyntenyIVF0019905
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGTTCGAAGTGGATAGCAACAATAATCAATTTTAGCTCGAATGGTTTGTAGAGGAACCCGTCCTTCTCTGATCCATTCGACATGTGCAATTTCTTTTTTGGCTATACGTTCGGCAATTTGTACTTGAATTCCCTTTGTACCCGCCTGTATTAGGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG

mRNA sequence

ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG

Coding sequence (CDS)

ATGCAGTTTTTCACCCATTTAACGACAGTAGAGGTAATTTGGAGAGCTCCTTGGATGCCCACAAGTCCTTTGACATACCGTTGTGGAAAATTGGCTTTTATCTCACTATTAGATAGCTTATGGGGGGCATTGCTTAGGCTTATGGGGGGCATTTCTTATTCTCCTCTTTTGATACTACGTAAATCCTGGTCAAAACAAATTGTATCAGTTGTATGTGGGCTAGAAGATTGGGAATTCTCGTATGAGTCCAACATAGCAAATAATAAAATTCATGAAGCAGTCGAGGCATGGAAATTTGTAAAGAAGATAAAGAGTTTGCAACATTGTGAGGGTACTACAAGACAGTATGATAATTAG

Protein sequence

MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYDN
Homology
BLAST of IVF0019905 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.5e-47
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILR 60
           MQFF+HLTT++ IWRAPWM TSPLT+RCGKLA I LL  LWG      GGI+YSPLL+LR
Sbjct: 200 MQFFSHLTTIDAIWRAPWMLTSPLTHRCGKLAIILLL-GLWG------GGIAYSPLLVLR 259

Query: 61  KSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYDN 119
           +SWSKQ   VVCGLEDWEFSYESNIANNKIHEAVEAWKFVKK+KSL+HCEGTT QYDN
Sbjct: 260 QSWSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDN 310

BLAST of IVF0019905 vs. ExPASy TrEMBL
Match: A0A0A0KP72 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528450 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.1e-29
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 11  EVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILRKSWSKQIVSV 70
           E++WR+ W+P SPLTYRCG+L FISLL  LW       GGI+YSPLL+L ++WSKQ  SV
Sbjct: 3   EIVWRSLWVPKSPLTYRCGQLLFISLL-GLW-------GGIAYSPLLVLHQTWSKQFASV 62

Query: 71  VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYD 118
           + GLEDW+FSYE++    K+ E +E WK V+++KSL+HC+GTT QYD
Sbjct: 63  IYGLEDWDFSYEADEMIVKVQEVIETWKVVRRLKSLRHCKGTTNQYD 101

BLAST of IVF0019905 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 45  LRLM-GGISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKI 104
           +RLM GGI+YSPLL+LR+SWSKQ   VVCGLEDWEFSYESNIANNKIHEAVEAWKFVKK+
Sbjct: 172 IRLMGGGIAYSPLLVLRQSWSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKM 231

Query: 105 KSLQHCEGTTRQYDN 119
           KSL+HCEGTT QYDN
Sbjct: 232 KSLRHCEGTTEQYDN 246

BLAST of IVF0019905 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 49  GGISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQH 108
           GGI+YSPLL+LR+SWSKQ   VVCGLEDWEFSYESNIAN+KIHEAVEAWKFVKK+KSL+H
Sbjct: 315 GGIAYSPLLVLRQSWSKQFAPVVCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRH 374

Query: 109 CEGTTRQYDN 119
           CEGTT QYDN
Sbjct: 375 CEGTTEQYDN 384

BLAST of IVF0019905 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 0

Query: 1   MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILR 60
           + FF  LT+  VIW+A WMP   + YRCG    + LL   W       GG++Y+PLL+LR
Sbjct: 280 LSFFAKLTSENVIWKAQWMPLKAVIYRCGDFHSVPLLGP-W-------GGVNYTPLLVLR 339

Query: 61  KSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYD 118
           + W KQ +     L++ +FSY+      K  +AV AWK ++KIK   H EG T  Y+
Sbjct: 340 QVWLKQFIPPTHNLQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYE 388

BLAST of IVF0019905 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (495), Expect = 3.06e-56
Identity = 93/118 (78.81%), Postives = 102/118 (86.44%), Query Frame = 0

Query: 1   MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILR 60
           MQFF+HLTT++ IWRAPWM TSPLT+RCGKLA I LL  LWG      GGI+YSPLL+LR
Sbjct: 200 MQFFSHLTTIDAIWRAPWMLTSPLTHRCGKLAIILLLG-LWG------GGIAYSPLLVLR 259

Query: 61  KSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYDN 118
           +SWSKQ   VVCGLEDWEFSYESNIANNKIHEAVEAWKFVKK+KSL+HCEGTT QYDN
Sbjct: 260 QSWSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKMKSLRHCEGTTEQYDN 310

BLAST of IVF0019905 vs. NCBI nr
Match: KGN51408.1 (hypothetical protein Csa_007736 [Cucumis sativus])

HSP 1 Score: 136 bits (343), Expect = 7.35e-39
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 11  EVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILRKSWSKQIVSV 70
           E++WR+ W+P SPLTYRCG+L FISLL  LWG       GI+YSPLL+L ++WSKQ  SV
Sbjct: 3   EIVWRSLWVPKSPLTYRCGQLLFISLLG-LWG-------GIAYSPLLVLHQTWSKQFASV 62

Query: 71  VCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYD 117
           + GLEDW+FSYE++    K+ E +E WK V+++KSL+HC+GTT QYD
Sbjct: 63  IYGLEDWDFSYEADEMIVKVQEVIETWKVVRRLKSLRHCKGTTNQYD 101

BLAST of IVF0019905 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 4.34e-35
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 0

Query: 45  LRLMGG-ISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKI 104
           +RLMGG I+YSPLL+LR+SWSKQ   VVCGLEDWEFSYESNIANNKIHEAVEAWKFVKK+
Sbjct: 172 IRLMGGGIAYSPLLVLRQSWSKQFAPVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKM 231

Query: 105 KSLQHCEGTTRQYDN 118
           KSL+HCEGTT QYDN
Sbjct: 232 KSLRHCEGTTEQYDN 246

BLAST of IVF0019905 vs. NCBI nr
Match: KAA0033221.1 (uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 9.06e-34
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 49  GGISYSPLLILRKSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQH 108
           GGI+YSPLL+LR+SWSKQ   VVCGLEDWEFSYESNIAN+KIHEAVEAWKFVKK+KSL+H
Sbjct: 315 GGIAYSPLLVLRQSWSKQFAPVVCGLEDWEFSYESNIANDKIHEAVEAWKFVKKMKSLRH 374

Query: 109 CEGTTRQYDN 118
           CEGTT QYDN
Sbjct: 375 CEGTTEQYDN 384

BLAST of IVF0019905 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.31e-21
Identity = 48/117 (41.03%), Postives = 68/117 (58.12%), Query Frame = 0

Query: 1   MQFFTHLTTVEVIWRAPWMPTSPLTYRCGKLAFISLLDSLWGALLRLMGGISYSPLLILR 60
           + FF+ L++ +VIW+A WMP   + YRCG    + LL   WG       G++Y+PLL+LR
Sbjct: 130 VSFFSTLSSEDVIWKAQWMPLKAVIYRCGDFHSVPLLGP-WG-------GVNYTPLLVLR 189

Query: 61  KSWSKQIVSVVCGLEDWEFSYESNIANNKIHEAVEAWKFVKKIKSLQHCEGTTRQYD 117
           + W KQ +     L+D +F+Y+      K H AV AWK V+KIK   H EG T  Y+
Sbjct: 190 QVWLKQFIPPTHNLQDSDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTSGYE 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D0S26.5e-4778.81Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KP722.1e-2957.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528450 PE=4 SV=1[more]
A0A5A7SNY02.8e-2985.33Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SUT02.3e-2885.71Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7T5S72.0e-1640.17Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... [more]
Match NameE-valueIdentityDescription
TYK16834.13.06e-5678.81glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KGN51408.17.35e-3957.94hypothetical protein Csa_007736 [Cucumis sativus][more]
KAA0032013.14.34e-3585.33glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0033221.19.06e-3485.71uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa][more]
XP_031739496.16.31e-2141.03uncharacterized protein LOC116403043 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48180FAMILY NOT NAMEDcoord: 5..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019905.1IVF0019905.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane