IVF0019625.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGAGTACGGCACCATGACACACGCCGGATGCCCATTGGTACGGCCATTGGCCCCAAGCACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCAGGAGGCGCGCGCGCCCCGCACAGGCAGCGCCCAGCATGGCGCGCGCAGCAGGATGCGCACGCGCCCCATATGGATGTGGCATGGCATGCACGACAGGCAGCACGCACGCCCCACGCAGGTGCAGCACGGCGCGCGCAGCATGAGGCCCATGCGCACGCGCCCCACGCAACAGGCGCGCGCGGCAGGATGCGCGCGCGTCCCACACAGGCGACGCCATAGCATGACGCGCACGGCATACAGCGTGCGCGCCCCAGGCGGAGGCAGCACGGCGCGCGCGGCACGACGCCCATGCGCGCGCGCCGCGAGTCGGAAGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACGCCCGCGAAGGGGCTGGAACGCGCGCGAGCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG MSRPVRRHRDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVCHGQPRTPMPSTAHAHGHMRMAWRQAQACTRTGMHAHQMPPMLVQARRARQHASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTREPAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVMVGPECSRVKCKGPNRLGSSR Homology
BLAST of IVF0019625.1 vs. ExPASy TrEMBL
Match: A0A5D3DH07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00250 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24 Identity = 96/227 (42.29%), Postives = 109/227 (48.02%), Query Frame = 0
BLAST of IVF0019625.1 vs. ExPASy TrEMBL
Match: A0A5D3D8I4 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00050 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23 Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0
BLAST of IVF0019625.1 vs. ExPASy TrEMBL
Match: A0A5A7TPM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001190 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04 Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 0
BLAST of IVF0019625.1 vs. NCBI nr
Match: TYK22843.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 126 bits (316), Expect = 9.97e-30 Identity = 71/119 (59.66%), Postives = 77/119 (64.71%), Query Frame = 0
BLAST of IVF0019625.1 vs. NCBI nr
Match: TYK19896.1 (dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 118 bits (296), Expect = 3.19e-26 Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0
BLAST of IVF0019625.1 vs. NCBI nr
Match: KAA0045130.1 (hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK23607.1 hypothetical protein E5676_scaffold500G001190 [Cucumis melo var. makuwa]) HSP 1 Score: 58.9 bits (141), Expect = 4.06e-06 Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|