IVF0019625 (gene) Melon (IVF77) v1

Overview


Name	IVF0019625
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Dual-specificity RNA methyltransferase RlmN isoform X1
Location	chr04: 22194350 .. 22195555 (-)
RNA-Seq Expression	IVF0019625
Synteny	IVF0019625

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGAGTACGGCACCATGACACACGCCGGATGCCCATTGGTACGGCCATTGGCCCCAAGCACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCAGGAGGCGCGCGCGCCCCGCACAGGCAGCGCCCAGCATGGCGCGCGCAGCAGGATGCGCACGCGCCCCATATGGATGTGGCATGGCATGCACGACAGGCAGCACGCACGCCCCACGCAGGTGCAGCACGGCGCGCGCAGCATGAGGCCCATGCGCACGCGCCCCACGCAACAGGCGCGCGCGGCAGGATGCGCGCGCGTCCCACACAGGCGACGCCATAGCATGACGCGCACGGCATACAGCGTGCGCGCCCCAGGCGGAGGCAGCACGGCGCGCGCGGCACGACGCCCATGCGCGCGCGCCGCGAGTCGGAAGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACGCCCGCGAAGGGGCTGGAACGCGCGCGAGCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG

mRNA sequence

ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG

Coding sequence (CDS)

ATGTCACGTCCCGTGAGACGACACCGAGATAGCCCCAGACTTGCGCCCAAATGTGCCCACGGCTCCTTAAGGATAGGCACGGAGGAGCCCCAACGTGGCCACGAGACAGCCCACGGGTGGCCACACCACACGCCCACGACACTGGCGTGTGCCTCTCGAGGACAGCCACAACATGTGTGCCACGGTCAGCCCAGGACACCAATGCCCAGCACAGCCCATGCGCACGGGCACATGCGCATGGCATGGCGGCAAGCCCAAGCATGCACGCGGACAGGCATGCACGCCCACCAGATGCCGCCCATGCTCGTCCAGGCAAGGCGCGCGCGGCAGCATGCGAGCGCGCCCCTAACATGCACAGCAACGCCTGGCACCAACGCTGCCCAGACAGCCCATGCGGCAGGCAGCCGCGCATGGCACAGACGCGCGCACCCACCAGACGGCCGCCCAGGCACGCACAAGCAAGGCGCGCGCGGCATGCTGCGCGCAACGTTGTGCGCGCAGCGGACGCACGCGACGGGCGCGCGCGGCACCCCGCGCGCACGCCCATGTCCGCCCAAGGCCGAGAAGAGCCCAGAAGCTTCTAGAACTTTCTATGACGGTCGGGATGACTCGGGAAGACTCCAGAAGACCCGCGAACCAGCCGGATGGCCTATGTCGGTGCGCGCCCAGCCGAGAAGCCTCCAGACACGTCCAGAAGCTTCTATGTCGGTGCAGAGACATACGATGACGGTCAGAAGTGTCATGGTAGGTCCAGAATGTTCTAGAGTCAAATGTAAAGGGCCAAACCGCCTTGGATCTTCTAGATAG

Protein sequence

MSRPVRRHRDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVCHGQPRTPMPSTAHAHGHMRMAWRQAQACTRTGMHAHQMPPMLVQARRARQHASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTREPAGWPMSVRAQPRSLQTRPEASMSVQRHTMTVRSVMVGPECSRVKCKGPNRLGSSR

Homology

[Close]

BLAST of IVF0019625 vs. ExPASy TrEMBL
Match: A0A5D3DH07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00250 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 96/227 (42.29%), Postives = 109/227 (48.02%), Query Frame = 0


Query: 9   RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC-------- 68
           +D  R+ P CAHGSLRIGTEEPQRG +TAHGWPHH   TLACASRGQ QH          
Sbjct: 198 KDLSRVVPLCAHGSLRIGTEEPQRGPKTAHGWPHHMSMTLACASRGQSQHCAMNSPGVWP 257

Query: 69  HGQPRTPM-----PST-------AHAHGHMRMAWRQAQACTRTGMHAHQMPPMLVQARRA 128
           HG PR P+     PST       A AH H + A   + ACTRTGMHAHQMPPML QARR 
Sbjct: 258 HGTPRCPLVRPLAPSTNAHHNTCARAHAHGQAA---SPACTRTGMHAHQMPPMLAQARR- 317

Query: 129 RQHASAPLTCTATPGTNAAQTAHAAGSRAWHRRAHPPDGRPGTHKQGARGMLRATLCAQR 188
                        P   A+      G  A H    P   RP   +  A G+ RA LC   
Sbjct: 318 -----------TAPCVRASDRPQMHG--AQHYALSP---RPRCMQHSACGVPRAGLCP-- 377

Query: 189 THATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTREPAG 216
                        P P + +   E S T    R+DS R     + AG
Sbjct: 378 -------------PRPRRGQMLLELSMTVGMTREDSRRPANACDRAG 389

[Close]

BLAST of IVF0019625 vs. ExPASy TrEMBL
Match: A0A5D3D8I4 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00050 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.1e-23
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 179 RARPCPPKAEKSPEASRTFYDGRDDSGRLQKT----------REPAGWPMSVRAQPRSLQ 238
           RARPCP KAEKSP+ASRTFYDGRD+SGRLQKT          RE  GWPMSVRAQPRSLQ
Sbjct: 2   RARPCPAKAEKSPDASRTFYDGRDNSGRLQKTRERPRRGWNAREQPGWPMSVRAQPRSLQ 61

Query: 239 TRPEASMSVQRHTMTVRSVM 249
           TRP+ASMSVQRHTM+VRSVM
Sbjct: 62  TRPKASMSVQRHTMSVRSVM 81

[Close]

BLAST of IVF0019625 vs. ExPASy TrEMBL
Match: A0A5A7TPM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001190 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 161 RATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWP-- 220
           R T+CA      GA  T  ARPC   ++K+ +    F  G      +QK  E P   P  
Sbjct: 12  RYTVCASHHATLGACSTLCARPCLRMSKKAKKPLELF--GHALFKSVQKAWEHPRRRPNM 71

Query: 221 -------MSVRAQPRSLQTRPEASMSVQRHTMTVRSVMVGPECSRVKCKGPNRL 265
                   S  A PR +QT PEASM++ + TMTVRSVM  P+CS+V C G  R+
Sbjct: 72  HKGSCQTESTHAHPRRIQTHPEASMTIWKATMTVRSVMECPDCSKVNCIGVERI 123

[Close]

BLAST of IVF0019625 vs. NCBI nr
Match: TYK22843.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 9.97e-30
Identity = 71/119 (59.66%), Postives = 77/119 (64.71%), Query Frame = 0


Query: 9   RDSPRLAPKCAHGSLRIGTEEPQRGHETAHGWPHHTPTTLACASRGQPQHVC-------- 68
           +D  R+ P CAHGSLRIGTEEPQRG +TAHGWPHH   TLACASRGQ QH          
Sbjct: 198 KDLSRVVPLCAHGSLRIGTEEPQRGPKTAHGWPHHMSMTLACASRGQSQHCAMNSPGVWP 257

Query: 69  HGQPRTPM-----PST-------AHAHGHMRMAWRQAQACTRTGMHAHQMPPMLVQARR 107
           HG PR P+     PST       A AH H + A   + ACTRTGMHAHQMPPML QARR
Sbjct: 258 HGTPRCPLVRPLAPSTNAHHNTCARAHAHGQAA---SPACTRTGMHAHQMPPMLAQARR 313

[Close]

BLAST of IVF0019625 vs. NCBI nr
Match: TYK19896.1 (dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 3.19e-26
Identity = 63/80 (78.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 179 RARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE----------PAGWPMSVRAQPRSLQ 238
           RARPCP KAEKSP+ASRTFYDGRD+SGRLQKTRE            GWPMSVRAQPRSLQ
Sbjct: 2   RARPCPAKAEKSPDASRTFYDGRDNSGRLQKTRERPRRGWNAREQPGWPMSVRAQPRSLQ 61

Query: 239 TRPEASMSVQRHTMTVRSVM 248
           TRP+ASMSVQRHTM+VRSVM
Sbjct: 62  TRPKASMSVQRHTMSVRSVM 81

[Close]

BLAST of IVF0019625 vs. NCBI nr
Match: KAA0045130.1 (hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK23607.1 hypothetical protein E5676_scaffold500G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.06e-06
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 159 MLRATLCAQRTHATGARGTPRARPCPPKAEKSPEASRTFYDGRDDSGRLQKTRE-PAGWP 218
           + R T+CA      GA  T  ARPC   ++K+ +    F      S  +QK  E P   P
Sbjct: 10  VARYTVCASHHATLGACSTLCARPCLRMSKKAKKPLELFGHALFKS--VQKAWEHPRRRP 69

Query: 219 M---------SVRAQPRSLQTRPEASMSVQRHTMTVRSVMVGPECSRVKCKGPNRL 264
                     S  A PR +QT PEASM++ + TMTVRSVM  P+CS+V C G  R+
Sbjct: 70  NMHKGSCQTESTHAHPRRIQTHPEASMTIWKATMTVRSVMECPDCSKVNCIGVERI 123

The following BLAST results are available for this feature:

BLAST of IVF0019625 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019625 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DH07	2.1e-24	42.29	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D8I4	5.1e-23	78.75	Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. maku...	[more]
A0A5A7TPM2	1.8e-04	39.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0019625 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22843.1	9.97e-30	59.66	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK19896.1	3.19e-26	78.75	dual-specificity RNA methyltransferase RlmN isoform X1 [Cucumis melo var. makuwa...	[more]
KAA0045130.1	4.06e-06	38.79	hypothetical protein E6C27_scaffold30G001290 [Cucumis melo var. makuwa] >TYK2360...	[more]

BLAST of IVF0019625 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019625.1	IVF0019625.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0030488	tRNA methylation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008173	RNA methyltransferase activity