IVF0015073.1 (mRNA) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA MANSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPYM Homology
BLAST of IVF0015073.1 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09 Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0
BLAST of IVF0015073.1 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of IVF0015073.1 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0
BLAST of IVF0015073.1 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa]) HSP 1 Score: 70.5 bits (171), Expect = 6.27e-13 Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0
BLAST of IVF0015073.1 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 65.5 bits (158), Expect = 9.89e-11 Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of IVF0015073.1 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 60.8 bits (146), Expect = 9.19e-10 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0
BLAST of IVF0015073.1 vs. NCBI nr
Match: KAA0062632.1 (uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa]) HSP 1 Score: 47.0 bits (110), Expect = 2.69e-04 Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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