IVF0015073 (gene) Melon (IVF77) v1

Overview
NameIVF0015073
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr04: 7127973 .. 7128143 (-)
RNA-Seq ExpressionIVF0015073
SyntenyIVF0015073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA

mRNA sequence

ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA

Coding sequence (CDS)

ATGGCAAATAGCAAGGATATGACTAATGCGTGCAAAGAGGAATTTGGAGACAAACCCTACCTTAGCGAGATAACTTCCACCATTTGTATTCCGAAAGAAGAAATAGTGTGGGCAATAGGCATCGAGAGGTTGTCACCCTTAAAAGAGAAGTACTATAAGCCTTATATGTGA

Protein sequence

MANSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPYM
Homology
BLAST of IVF0015073 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-09
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 4  SKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPY 56
          SKDM N CKEEF    ++ EITS  C+PK E VW +  ERL PLKEKYYK Y
Sbjct: 14 SKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEKYYKSY 65

BLAST of IVF0015073 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 2  ANSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIER 44
          A+SKDM NACKE+FGD+ YLS+ITS IC+PK E VW  G ER
Sbjct: 40 ASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0015073 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 3   NSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPY 56
           +SKD+ N C+EEFGD  +  +ITS IC P+   VWAIG ERL  L EK+Y  Y
Sbjct: 94  SSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFY 146

BLAST of IVF0015073 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.27e-13
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 4  SKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPY 55
          SKDM N CKEEF    ++ EITS  C+PK E VW +  ERL PLKEKYYK Y
Sbjct: 14 SKDMANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEKYYKSY 65

BLAST of IVF0015073 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 9.89e-11
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 2  ANSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIER 43
          A+SKDM NACKE+FGD+ YLS+ITS IC+PK E VW  G ER
Sbjct: 40 ASSKDMANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0015073 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 9.19e-10
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 3   NSKDMTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERLSPLKEKYYKPY 55
           +SKD+ N C+EEFGD  +  +ITS IC P+   VWAIG ERL  L EK+Y  Y
Sbjct: 94  SSKDVDNECQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFYTFY 146

BLAST of IVF0015073 vs. NCBI nr
Match: KAA0062632.1 (uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 47.0 bits (110), Expect = 2.69e-04
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 7  MTNACKEEFGDKPYLSEITSTICIPKEEIVWAIGIERL 44
          M N  KEEF +K +L + TS IC PK   VWAIG+ERL
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVERL 38

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9513.3e-0961.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DDG51.1e-0769.05Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ... [more]
A0A5D3CY292.7e-0654.72Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK07860.16.27e-1361.54uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa][more]
KAA0026294.19.89e-1169.05cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >... [more]
KAA0032002.19.19e-1054.72Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Tran... [more]
KAA0062632.12.69e-0457.89uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0015073.1IVF0015073.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane