HG10020117.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10020117.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cytochrome b-c1 complex subunit 9-like
Location	Chr04: 28928975 .. 28930547 (-)
Sequence length	414
RNA-Seq Expression	HG10020117.1
Synteny	HG10020117.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTTTGTGGATATCTGATGGAACCACACGCTTTCTTTGATCATCCAAATTATTTATTTTTAATCTGTCAACCAATAATTTATAACTATATCCAAGAGTTATGGAGCTGTTATGGAGCTCCACTTAAAGTCTTTGTTCTTTAAATGAGACTTTATTCTTTTTAAATTTCACTCAACTTCACTTAATGCAACTCCTTTTTTTATCGTAAATTTGAACAACCTATCAAATTTATTCTTGACATAACATTGTTGTGTGTATCACCTTAAGTCAAAGTCGTTTTGCAACATCTAAAAGTTGATAAATCACTTAATTATAGAGAACCGTCCATGATAATTTGTGTATTTATCCATTGAGATTGGCTCAATTTCAAAATTTTAGAGTATACTAAGGCTAGTTCGGGTTCTCAGTATTTCTACTAAACTGAAACGGTTCAGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGTAACGTCGTGGACCTCATATTTTATACTAATTTATGTTTGTTAGGTTTTTATCTCTTCTTATGGTGGATTGTTGATTTGTTAATTTCGTTTTTCGCGTTTGATCTGAAGATCTAGTTTTTGCAAATCACTTGATATTGCTATTAAAATTCGTGATTGTGTTTTCGCTGATTCGTGGAAAACAAAGATTCAACGAAATAAGCTTGTTCGCGTGTGCTCTCTCGAGAGGTGAAGTAGGTGGAACTGTATTGAAATTTATGGTTTATCTGACCGAGGAGAATCGATTAAGAGTAGAGGATTCATATATTGGTTTCATTTTTGTTCCAACATATATTTTTTGGATTCATATATTGGTTTCTGGCATCAATTAAAAAGTCCGCTGAACATGATCGATCGTATTGAATTTCGTTCATGATGCTATGCAGATTCTGAATTATGTAAAGTAACTTAGTAGATTTTCTTTATGTATGGAAATCCGGAATTTGGGCATTATTTGGTCTGCTTGTCAGAGGAGTTTCATTTTTGCTCTAAATTATACACGATCATGATAGTGGAAGTGGTAAGCAGAAAAAAGGAACATAAGAATGTCTCTTTCATTGTTCTATGGACTGTTATGTAATGGGCCTTGGTGTATTAAATCGTAGTAGGGGGCTTCTGAGTTGCATGGCATCTGTGTGTGTGTGTGATTGGTTTTTACCTCAATGCTTGGATTTCCATTGGTGCAGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

mRNA sequence

ATGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

Coding sequence (CDS)

ATGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

Protein sequence

MTDRSVIQQAQPVRSGQVPCSSLSTNQAIPFLSSSLNQRREKFLQTLTLRSEEELARDTSTMNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWNLAPYIALLCFSMYTFQI

Homology

[Close]

BLAST of HG10020117.1 vs. NCBI nr
Match: KAG7017456.1 (hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 21  SSLSTNQAIPFLSSSLNQRREKFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLYR 80
           S ++TNQ  PF SSSLNQRR KFL TLT RSE +ELAR TSTMNSAGRRSGGGLFEGLYR
Sbjct: 32  SRVATNQTTPFPSSSLNQRRGKFLLTLTHRSEGKELAR-TSTMNSAGRRSGGGLFEGLYR 91

Query: 81  VIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           VIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 92  VIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 128

[Close]

BLAST of HG10020117.1 vs. NCBI nr
Match: KAG6580699.1 (Glucosamine 6-phosphate N-acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 21  SSLSTNQAIPFLSSSLNQRREKFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLYR 80
           S ++TNQ  PF SSSLNQRR KFL TLT RSE +ELAR TSTMNSAGRRSGGGLFEGLYR
Sbjct: 32  SRVATNQTTPFPSSSLNQRRGKFLLTLTHRSEGKELAR-TSTMNSAGRRSGGGLFEGLYR 91

Query: 81  VIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           VIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 92  VIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 128

[Close]

BLAST of HG10020117.1 vs. NCBI nr
Match: XP_022934205.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cytochrome b-c1 complex subunit 9-like [Cucurbita maxima] >XP_023526376.1 cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]

BLAST of HG10020117.1 vs. NCBI nr
Match: KAG6596568.1 (Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 28  AIPFLSSSLNQRRE--------KFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLY 87
           A+ FL+  L + ++        K  +   LRSE +ELAR TSTMNSA  RS GGLFEGLY
Sbjct: 72  AVKFLTVRLREIKQLHSHFSQPKAREDFALRSEGKELAR-TSTMNSAAPRS-GGLFEGLY 131

Query: 88  RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 132 RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 168

[Close]

BLAST of HG10020117.1 vs. NCBI nr
Match: XP_018498571.1 (PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschneideri] >XP_018506998.1 PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 114.4 bits (285), Expect = 7.8e-22
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWNL 121
           M+SA RRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGV  L
Sbjct: 1   MDSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGVCEL 60

[Close]

BLAST of HG10020117.1 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

[Close]

BLAST of HG10020117.1 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M SA RRSGGG+ EG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVG
Sbjct: 1   MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56

[Close]

BLAST of HG10020117.1 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]

BLAST of HG10020117.1 vs. ExPASy TrEMBL
Match: A0A6J1F714 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111441446 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]

BLAST of HG10020117.1 vs. ExPASy TrEMBL
Match: A0A803P643 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWN 121
           M+SA RR+GGGLFEGLY+VIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGVW+
Sbjct: 1   MDSAARRTGGGLFEGLYKVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGVWH 59

[Close]

BLAST of HG10020117.1 vs. ExPASy TrEMBL
Match: A0A314YLX6 (Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_40588 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSA RRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]

BLAST of HG10020117.1 vs. ExPASy TrEMBL
Match: A0A6J1CST4 (cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC111014251 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWE+NNVG
Sbjct: 1   MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEHNNVG 56

[Close]

BLAST of HG10020117.1 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

The following BLAST results are available for this feature:

BLAST of HG10020117.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017456.1	1.1e-34	86.73	hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580699.1	1.1e-34	86.73	Glucosamine 6-phosphate N-acetyltransferase, partial [Cucurbita argyrosperma sub...	[more]
XP_022934205.1	1.6e-22	98.21	cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cyto...	[more]
KAG6596568.1	2.7e-22	69.70	Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperm...	[more]
XP_018498571.1	7.8e-22	90.00	PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschnei...	[more]

BLAST of HG10020117.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ2	4.2e-18	78.57	Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
P46270	3.5e-17	73.21	Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1	[more]

BLAST of HG10020117.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J703	7.6e-23	98.21	cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818...	[more]
A0A6J1F714	7.6e-23	98.21	cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A803P643	1.3e-22	88.14	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A314YLX6	4.9e-22	94.64	Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 ...	[more]
A0A6J1CST4	6.5e-22	96.43	cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of HG10020117.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52730.1	3.0e-19	78.57	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	GENE3D	1.20.5.260		coord: 71..122 e-value: 2.0E-21 score: 77.4
IPR036656	Cytochrome b-c1 complex subunit 9 superfamily	SUPERFAMILY	81514	Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 73..117
IPR008027	Cytochrome b-c1 complex subunit 9	PFAM	PF05365	UCR_UQCRX_QCR9	coord: 76..117 e-value: 4.9E-17 score: 61.6
IPR008027	Cytochrome b-c1 complex subunit 9	PANTHER	PTHR12980	UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X	coord: 62..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR12980:SF4	CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKE	coord: 62..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10020117	HG10020117	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10020117.1-cds	HG10020117.1-cds-Chr04:28928975..28929085	CDS
HG10020117.1-cds	HG10020117.1-cds-Chr04:28929810..28930109	CDS
HG10020117.1-cds	HG10020117.1-cds-Chr04:28930545..28930547	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10020117.1	HG10020117.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005750	mitochondrial respiratory chain complex III
molecular_function	GO:0008080	N-acetyltransferase activity