HG10020117 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10020117
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncytochrome b-c1 complex subunit 9-like
LocationChr04: 28928975 .. 28930547 (-)
RNA-Seq ExpressionHG10020117
SyntenyHG10020117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTTTGTGGATATCTGATGGAACCACACGCTTTCTTTGATCATCCAAATTATTTATTTTTAATCTGTCAACCAATAATTTATAACTATATCCAAGAGTTATGGAGCTGTTATGGAGCTCCACTTAAAGTCTTTGTTCTTTAAATGAGACTTTATTCTTTTTAAATTTCACTCAACTTCACTTAATGCAACTCCTTTTTTTATCGTAAATTTGAACAACCTATCAAATTTATTCTTGACATAACATTGTTGTGTGTATCACCTTAAGTCAAAGTCGTTTTGCAACATCTAAAAGTTGATAAATCACTTAATTATAGAGAACCGTCCATGATAATTTGTGTATTTATCCATTGAGATTGGCTCAATTTCAAAATTTTAGAGTATACTAAGGCTAGTTCGGGTTCTCAGTATTTCTACTAAACTGAAACGGTTCAGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGTAACGTCGTGGACCTCATATTTTATACTAATTTATGTTTGTTAGGTTTTTATCTCTTCTTATGGTGGATTGTTGATTTGTTAATTTCGTTTTTCGCGTTTGATCTGAAGATCTAGTTTTTGCAAATCACTTGATATTGCTATTAAAATTCGTGATTGTGTTTTCGCTGATTCGTGGAAAACAAAGATTCAACGAAATAAGCTTGTTCGCGTGTGCTCTCTCGAGAGGTGAAGTAGGTGGAACTGTATTGAAATTTATGGTTTATCTGACCGAGGAGAATCGATTAAGAGTAGAGGATTCATATATTGGTTTCATTTTTGTTCCAACATATATTTTTTGGATTCATATATTGGTTTCTGGCATCAATTAAAAAGTCCGCTGAACATGATCGATCGTATTGAATTTCGTTCATGATGCTATGCAGATTCTGAATTATGTAAAGTAACTTAGTAGATTTTCTTTATGTATGGAAATCCGGAATTTGGGCATTATTTGGTCTGCTTGTCAGAGGAGTTTCATTTTTGCTCTAAATTATACACGATCATGATAGTGGAAGTGGTAAGCAGAAAAAAGGAACATAAGAATGTCTCTTTCATTGTTCTATGGACTGTTATGTAATGGGCCTTGGTGTATTAAATCGTAGTAGGGGGCTTCTGAGTTGCATGGCATCTGTGTGTGTGTGTGATTGGTTTTTACCTCAATGCTTGGATTTCCATTGGTGCAGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

mRNA sequence

ATGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

Coding sequence (CDS)

ATGACAGACCGTTCGGTTATCCAGCAAGCCCAACCGGTTCGAAGCGGTCAAGTTCCTTGCAGTTCGCTTTCGACGAATCAAGCAATTCCATTCCTGTCTTCTTCTCTCAACCAAAGGCGCGAGAAGTTCTTGCAAACCCTAACGCTTAGATCAGAAGAAGAACTCGCGAGAGACACATCAACAATGAATTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGTTTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTGTTGGAGAACGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTCGGGGTATGGAACTTAGCCCCATATATTGCTTTGCTTTGTTTTTCTATGTACACATTTCAAATTTAA

Protein sequence

MTDRSVIQQAQPVRSGQVPCSSLSTNQAIPFLSSSLNQRREKFLQTLTLRSEEELARDTSTMNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWNLAPYIALLCFSMYTFQI
Homology
[Close]
BLAST of HG10020117 vs. NCBI nr
Match: KAG7017456.1 (hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 21  SSLSTNQAIPFLSSSLNQRREKFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLYR 80
           S ++TNQ  PF SSSLNQRR KFL TLT RSE +ELAR TSTMNSAGRRSGGGLFEGLYR
Sbjct: 32  SRVATNQTTPFPSSSLNQRRGKFLLTLTHRSEGKELAR-TSTMNSAGRRSGGGLFEGLYR 91

Query: 81  VIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           VIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 92  VIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 128

[Close]
BLAST of HG10020117 vs. NCBI nr
Match: KAG6580699.1 (Glucosamine 6-phosphate N-acetyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 21  SSLSTNQAIPFLSSSLNQRREKFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLYR 80
           S ++TNQ  PF SSSLNQRR KFL TLT RSE +ELAR TSTMNSAGRRSGGGLFEGLYR
Sbjct: 32  SRVATNQTTPFPSSSLNQRRGKFLLTLTHRSEGKELAR-TSTMNSAGRRSGGGLFEGLYR 91

Query: 81  VIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           VIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 92  VIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 128

[Close]
BLAST of HG10020117 vs. NCBI nr
Match: XP_022934205.1 (cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cytochrome b-c1 complex subunit 9-like [Cucurbita maxima] >XP_023526376.1 cytochrome b-c1 complex subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of HG10020117 vs. NCBI nr
Match: KAG6596568.1 (Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-22
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 0 

Query: 28  AIPFLSSSLNQRRE--------KFLQTLTLRSE-EELARDTSTMNSAGRRSGGGLFEGLY 87
           A+ FL+  L + ++        K  +   LRSE +ELAR TSTMNSA  RS GGLFEGLY
Sbjct: 72  AVKFLTVRLREIKQLHSHFSQPKAREDFALRSEGKELAR-TSTMNSAAPRS-GGLFEGLY 131

Query: 88  RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG
Sbjct: 132 RVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 168

[Close]
BLAST of HG10020117 vs. NCBI nr
Match: XP_018498571.1 (PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschneideri] >XP_018506998.1 PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 114.4 bits (285), Expect = 7.8e-22
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWNL 121
           M+SA RRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGV  L
Sbjct: 1   MDSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGVCEL 60

[Close]
BLAST of HG10020117 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-18
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

[Close]
BLAST of HG10020117 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-17
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M SA RRSGGG+ EG YR++MRR  VYVTF+IAGA +GERAVDYGV  LWE NNVG
Sbjct: 1   MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVG 56

[Close]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match: A0A6J1F714 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111441446 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.6e-23
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match: A0A803P643 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVGVWN 121
           M+SA RR+GGGLFEGLY+VIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVGVW+
Sbjct: 1   MDSAARRTGGGLFEGLYKVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGVWH 59

[Close]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match: A0A314YLX6 (Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_40588 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSA RRSGGGLFEGLYRVIMRRNSVYVTF+IAGAF+GERAVDYGVHKLWEYNNVG
Sbjct: 1   MNSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVG 56

[Close]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match: A0A6J1CST4 (cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC111014251 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-22
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           MNSAGRRSGGGL EGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWE+NNVG
Sbjct: 1   MNSAGRRSGGGLLEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEHNNVG 56

[Close]
BLAST of HG10020117 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-19
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 0 

Query: 62  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFVGERAVDYGVHKLWEYNNVG 118
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVG
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVG 56

The following BLAST results are available for this feature:
BLAST of HG10020117 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017456.11.1e-3486.73hypothetical protein SDJN02_19321, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6580699.11.1e-3486.73Glucosamine 6-phosphate N-acetyltransferase, partial [Cucurbita argyrosperma sub... [more]
XP_022934205.11.6e-2298.21cytochrome b-c1 complex subunit 9-like [Cucurbita moschata] >XP_022983168.1 cyto... [more]
KAG6596568.12.7e-2269.70Cytochrome b-c1 complex subunit 9, mitochondrial, partial [Cucurbita argyrosperm... [more]
XP_018498571.17.8e-2290.00PREDICTED: cytochrome b-c1 complex subunit 9-like isoform X1 [Pyrus x bretschnei... [more]
BLAST of HG10020117 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXJ24.2e-1878.57Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
P462703.5e-1773.21Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
BLAST of HG10020117 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J7037.6e-2398.21cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818... [more]
A0A6J1F7147.6e-2398.21cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A803P6431.3e-2288.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A314YLX64.9e-2294.64Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 ... [more]
A0A6J1CST46.5e-2296.43cytochrome b-c1 complex subunit 9-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
BLAST of HG10020117 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52730.13.0e-1978.57ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyGENE3D1.20.5.260coord: 71..122
e-value: 2.0E-21
score: 77.4
IPR036656Cytochrome b-c1 complex subunit 9 superfamilySUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 73..117
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 76..117
e-value: 4.9E-17
score: 61.6
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 62..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR12980:SF4CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKEcoord: 62..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10020117.1HG10020117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0015031 protein transport
cellular_component GO:0005750 mitochondrial respiratory chain complex III
molecular_function GO:0008080 N-acetyltransferase activity