HG10007872.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007872.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	mitochondrial import inner membrane translocase subunit TIM23-2-like
Location	Chr10: 16292131 .. 16292682 (-)
Sequence length	552
RNA-Seq Expression	HG10007872.1
Synteny	HG10007872.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

mRNA sequence

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Coding sequence (CDS)

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Protein sequence

MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI

Homology

[Close]

BLAST of HG10007872.1 vs. NCBI nr
Match: XP_022988221.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-90
Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872.1 vs. NCBI nr
Match: XP_038878582.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSSKSA DRKTR YHPYQDLHVPI KLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSSKSAHDRKTRFYHPYQDLHVPIAKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGRDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. NCBI nr
Match: XP_008462719.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo] >KAA0062574.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa] >TYK28799.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. NCBI nr
Match: XP_022961272.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023534786.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo] >KAG6590277.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033438.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 9.0e-90
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872.1 vs. NCBI nr
Match: XP_004142525.2 (LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus] >XP_031736235.1 LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 172/183 (93.99%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLG  GLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGSXGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot
Match: Q38820 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-53
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot
Match: Q9S837 (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot
Match: Q9LNQ1 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot
Match: Q9USM7 (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-16
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSV 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNS 136
           +G++  +   S +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGALYK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot
Match: P32897 (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 47  PHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRA 106
           P R W ++L Y TG  YL G  +GG  G +QGL+   P    KL+LN VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 107 GNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIA 166
           GN+ GIL L +  + S +  LRG  D   SI AG  TGAL+K++ G +    + A+  +A
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM--VA 208

Query: 167 AAAAV 172
           AA AV
Sbjct: 209 AACAV 211

[Close]

BLAST of HG10007872.1 vs. ExPASy TrEMBL
Match: A0A6J1JGM0 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485524 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872.1 vs. ExPASy TrEMBL
Match: A0A5A7V5P8 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001650 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. ExPASy TrEMBL
Match: A0A1S3CJ69 (mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo OX=3656 GN=LOC103501018 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. ExPASy TrEMBL
Match: A0A6J1H9R2 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111461819 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.3e-90
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872.1 vs. ExPASy TrEMBL
Match: A0A0A0M0I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872.1 vs. TAIR 10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2 )

HSP 1 Score: 208.0 bits (528), Expect = 6.5e-54
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of HG10007872.1 vs. TAIR 10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3 )

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-53
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of HG10007872.1 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-53
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

The following BLAST results are available for this feature:

BLAST of HG10007872.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988221.1	2.4e-90	97.28	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_038878582.1	3.1e-90	97.27	mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa ...	[more]
XP_008462719.1	3.1e-90	96.17	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
XP_022961272.1	9.0e-90	96.74	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_004142525.2	4.9e-88	93.99	LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM...	[more]

BLAST of HG10007872.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38820	9.1e-53	58.79	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
Q9S837	2.0e-52	56.52	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
Q9LNQ1	3.5e-52	58.79	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
Q9USM7	2.3e-16	36.88	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
P32897	1.6e-12	41.60	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of HG10007872.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGM0	1.1e-90	97.28	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A5A7V5P8	1.5e-90	96.17	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A1S3CJ69	1.5e-90	96.17	mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A6J1H9R2	4.3e-90	96.74	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A0A0M0I6	1.3e-89	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1	[more]

BLAST of HG10007872.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72750.1	6.5e-54	58.79	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	1.4e-53	56.52	translocase inner membrane subunit 23-3	[more]
AT1G17530.1	2.5e-53	58.79	translocase of inner mitochondrial membrane 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 57..165 e-value: 2.0E-23 score: 82.9
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183
None	No IPR available	PANTHER	PTHR15371:SF24	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3	coord: 1..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10007872	HG10007872	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10007872.1-cds	HG10007872.1-cds-Chr10:16292131..16292682	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10007872.1	HG10007872.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity