HG10007872 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10007872
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	mitochondrial import inner membrane translocase subunit TIM23-2-like
Location	Chr10: 16292131 .. 16292682 (-)
RNA-Seq Expression	HG10007872
Synteny	HG10007872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

mRNA sequence

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Coding sequence (CDS)

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACTCGTCTCTATCATCCCTACCAAGACCTGCACGTCCCGATCACCAAGCTTTACGAGCTCCCCACCGCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCGTTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGAGCGGCCGAGCCCGGCGACTCTGTCAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCCCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAGGCGGCTTCAGGGCCTAGGTCGGCTGCCATCGCCGGTGCCATTGGAGGGATTGCCGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG

Protein sequence

MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI

Homology

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BLAST of HG10007872 vs. NCBI nr
Match: XP_022988221.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-90
Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

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BLAST of HG10007872 vs. NCBI nr
Match: XP_038878582.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa hispida])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSSKSA DRKTR YHPYQDLHVPI KLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSSKSAHDRKTRFYHPYQDLHVPIAKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGRDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872 vs. NCBI nr
Match: XP_008462719.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo] >KAA0062574.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa] >TYK28799.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

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BLAST of HG10007872 vs. NCBI nr
Match: XP_022961272.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023534786.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo] >KAG6590277.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033438.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.5 bits (872), Expect = 9.0e-90
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

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BLAST of HG10007872 vs. NCBI nr
Match: XP_004142525.2 (LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus] >XP_031736235.1 LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 172/183 (93.99%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLG  GLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGSXGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872 vs. ExPASy Swiss-Prot
Match: Q38820 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-53
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of HG10007872 vs. ExPASy Swiss-Prot
Match: Q9S837 (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of HG10007872 vs. ExPASy Swiss-Prot
Match: Q9LNQ1 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.5e-52
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of HG10007872 vs. ExPASy Swiss-Prot
Match: Q9USM7 (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-16
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 17  HPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAVLGGARGSV 76
           HP  DL  P+  L     A   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNS 136
           +G++  +   S +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGALYK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of HG10007872 vs. ExPASy Swiss-Prot
Match: P32897 (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 47  PHRSWGENLQYYTGIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRA 106
           P R W ++L Y TG  YL G  +GG  G +QGL+   P    KL+LN VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 107 GNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIA 166
           GN+ GIL L +  + S +  LRG  D   SI AG  TGAL+K++ G +    + A+  +A
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM--VA 208

Query: 167 AAAAV 172
           AA AV
Sbjct: 209 AACAV 211

[Close]

BLAST of HG10007872 vs. ExPASy TrEMBL
Match: A0A6J1JGM0 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485524 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 179/184 (97.28%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872 vs. ExPASy TrEMBL
Match: A0A5A7V5P8 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001650 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872 vs. ExPASy TrEMBL
Match: A0A1S3CJ69 (mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo OX=3656 GN=LOC103501018 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872 vs. ExPASy TrEMBL
Match: A0A6J1H9R2 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111461819 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.3e-90
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TR YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of HG10007872 vs. ExPASy TrEMBL
Match: A0A0A0M0I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.3e-89
Identity = 174/183 (95.08%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+R YHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of HG10007872 vs. TAIR 10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2 )

HSP 1 Score: 208.0 bits (528), Expect = 6.5e-54
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 0


Query: 5   SKSADDRKTRLYHPYQDLHVPITK---LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TRLY+PYQ+  VPI K   LY+LPT+PE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G+V G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of HG10007872 vs. TAIR 10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3 )

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-53
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRLYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPT+PE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G+VLG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of HG10007872 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-53
Identity = 107/182 (58.79%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 4   SSKSADDRKTRLYHPYQDLHVPITK--LYELPTAPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TRLYHPYQ+  VPI    LY+LPT+PE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAVLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G+V G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

The following BLAST results are available for this feature:

BLAST of HG10007872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988221.1	2.4e-90	97.28	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_038878582.1	3.1e-90	97.27	mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa ...	[more]
XP_008462719.1	3.1e-90	96.17	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
XP_022961272.1	9.0e-90	96.74	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_004142525.2	4.9e-88	93.99	LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM...	[more]

BLAST of HG10007872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38820	9.1e-53	58.79	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
Q9S837	2.0e-52	56.52	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
Q9LNQ1	3.5e-52	58.79	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
Q9USM7	2.3e-16	36.88	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
P32897	1.6e-12	41.60	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of HG10007872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGM0	1.1e-90	97.28	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A5A7V5P8	1.5e-90	96.17	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A1S3CJ69	1.5e-90	96.17	mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A6J1H9R2	4.3e-90	96.74	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A0A0M0I6	1.3e-89	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1	[more]

BLAST of HG10007872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72750.1	6.5e-54	58.79	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	1.4e-53	56.52	translocase inner membrane subunit 23-3	[more]
AT1G17530.1	2.5e-53	58.79	translocase of inner mitochondrial membrane 23	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 57..165 e-value: 2.0E-23 score: 82.9
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183
None	No IPR available	PANTHER	PTHR15371:SF24	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10007872.1	HG10007872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity