HG10001250.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGGTAATAAGTCCTCTACAATTACATCATCAACCGTATCCTTTTCTTTTAAATGAATTTGTACTTGTGCTTGTAATTTCTATGCCTGTGTCCATCATGCTAGATTCAGGGTGTAGGATACTTACTAATTATGTAATCAAGTGATTTCTTTTCCCTGTGTATAGTTACAGATGACATGTTAAATAGTGTGTCTGTTCCATATAGGAGCTAAGTAGAGCTGTAGAAGAGGAATGAATTATCAATAAATTTAACTCAAGAATTTTGGAGTTCTAGGATAGGATTGTGAGCCAACAATTCATCATTCATGCTCCCATTATGAGTTTCATTTCCTCCCCTACTTGTAATTAAATGTCACTTTTTCTGTATAAAAGTAAAAAGAAAAAAGTTATCCTAGTGCAGCGATATTTAGTTGACGATGAGTAAAATGCATCCATTTTCTTCATGTGTGATGCACTAGAATAAAATAGTAATCCAGCTGATACTCTTGGCATGGTTTGACCAATAAACATTTTAATGATTTAGTATAGACATGGCAATAAGTTTAATAATGGACCCTTTGCTGTGGAGATAACATTCGTTTGAAGCAGTAATTGTAACTATTTCCAAATAAACACCTGATTATTCTGTGGAAGTGTCTAATAGATATGGAGAATTCACTATACCTATCAGAACATTACGAACCTTTGTTTTTAATTGTTATATTCAAGCCACTCTTTGAGCTCATGTTTGAAGACAATGTCTCTGTTACTATTGGTGATATCTCATATCATTTATTCAACTACTTTTTGTTGCAGATGTTACCTTAGTTTTAAAGCATTGAAAGCTTGCTTAGTCCTAGGTTAGATTGTAGCTCCTGGTTAGGAAAGGATTTTTCCGCATAGTTGCTTGAAAAGTATCCAAATTCTATCAGATTGACCTGAATTAAGGCAATTTAACCTTTACTAGGTTTGGATTATTTGATGTTTTCTGCCTATGGTTAGACATGAAGTAAAAATATAATGTTGTTTTCTGCCTAAGGTTAGACTTAAGGGAAAAATATTTATGAGCATATTGTCAAATGGAAGCTTAAATGATGTCTACCCCTGAAAAGGGAGTTAAGTGACACTGAATTCTGAAGCCAGTTAAATCATAAAGGCACAAATTTTTAACCAGGTAGAGAACCATTATCATCTTCTTTATTCCAAGGAGTGCTGTTTGTGAGCCAATTTTTTTTCTCTCTGCCTTCCAATTATCGATAAGTTTCTTTTTGAATCTCTTGTGTGATCCAAAAAGTATGTTTATCCGAATCCATAGATGAGATGGCATTACCATAGCACAGTGGTAATCTACGTTGGCTTCTTCTCCCCCCCAAATCCATAGATGAGGCCCTTAAGATTATATAAAATTTGAATTTCCCTTCCTTTTTTGAAATTGACAGAACCATGAAATGTGTATATCGTACAATTTTGTTGTTAATCTATTTATCAGGTTGTAATTTTTTCATGAAGTGTGCCTTTTTTTTTTTTTTCTTTTTTTCAGATTTATTCTAAACTATACATTTCTGTTTCATGGAGTTATTAAAGGGCTGACTTTTTATATTATCAAAAAGGTTGGAAGGCATATTTTAAACTTCAAAAGTTTTGGAGCAGCATTGAAAACTAGTTATAGTTTAGAGGGTGGAAAAGTTATCTGGCCTTGAGTAAATCATAAGCGTCTTTTCAGCCAGCAGGCGTTTGGATAATTAAACCCCTTTCTGCTTAAGGTTAGACTTAAGTAACTACACCATTGAAGTTATGTTCAGCTTGACGGCTTCTCCATGCAATGTTAGATAGAAGTTAGAACCACGGGGTTCCTTTAACAATATAACTAAGGATGAGCCGGCATTGGTATCTGCCCCTGGAAAGACCGGTTAAAAGGCACAAAATTTAAAACCAGTTAAATCTAAACTTGAAAGGCACAAATGACTATTTCTATCTGCCTCTGGATAGCACCTGGCTTTAATTTCAGATTCGGGACAAATGATATTGGTTACCGATAGGATGATAAGTTGCAGGAATTCAAAAGCCCGTCAGTTGATATGACAAAACTCACGAACTAATAAAATTTCACAGGGAAATATCATACCAATCCCAAAATTTTATTGCTTGAGAATTGCCTACGCGCCTCCATTTTAGATCGAGGCTACAACTCAAGTCCTGCCCTTTAGTCCCCCCTTTTTTTTATCGTCTAAGCTTTGTTTTATGCATTGTGGCATTCTTCTACATTTTCTTTTCTAGTACAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEKSFYTYWIELVCRYCCHKKGISKGSMKLCEASGNSCSSAEAGTLQMGQAYEMDIFLSSNDIMY Homology
BLAST of HG10001250.1 vs. NCBI nr
Match: XP_038902642.1 (uncharacterized protein LOC120089290 [Benincasa hispida]) HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15 Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of HG10001250.1 vs. NCBI nr
Match: XP_022944563.1 (uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 uncharacterized protein LOC111483810 [Cucurbita maxima]) HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15 Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of HG10001250.1 vs. NCBI nr
Match: KAG7010338.1 (hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15 Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of HG10001250.1 vs. NCBI nr
Match: XP_016900731.1 (PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC domain-containing protein 40 [Cucumis melo var. makuwa]) HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14 Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of HG10001250.1 vs. NCBI nr
Match: XP_023512164.1 (uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 89.0 bits (219), Expect = 2.9e-14 Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0
BLAST of HG10001250.1 vs. ExPASy TrEMBL
Match: A0A6J1J9H8 (uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15 Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of HG10001250.1 vs. ExPASy TrEMBL
Match: A0A6J1FY60 (uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC111448980 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15 Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of HG10001250.1 vs. ExPASy TrEMBL
Match: A0A5A7V382 (NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00990 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15 Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of HG10001250.1 vs. ExPASy TrEMBL
Match: A0A1S4DXM3 (NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15 Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of HG10001250.1 vs. ExPASy TrEMBL
Match: A0A0A0KEF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14 Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0
BLAST of HG10001250.1 vs. TAIR 10
Match: AT3G44280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10 Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0
BLAST of HG10001250.1 vs. TAIR 10
Match: AT5G22280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09 Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0
BLAST of HG10001250.1 vs. TAIR 10
Match: AT5G22280.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. ) HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09 Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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