HG10001250 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001250
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionNAC domain-containing protein 40
LocationChr09: 15412684 .. 15415285 (-)
RNA-Seq ExpressionHG10001250
SyntenyHG10001250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGGTAATAAGTCCTCTACAATTACATCATCAACCGTATCCTTTTCTTTTAAATGAATTTGTACTTGTGCTTGTAATTTCTATGCCTGTGTCCATCATGCTAGATTCAGGGTGTAGGATACTTACTAATTATGTAATCAAGTGATTTCTTTTCCCTGTGTATAGTTACAGATGACATGTTAAATAGTGTGTCTGTTCCATATAGGAGCTAAGTAGAGCTGTAGAAGAGGAATGAATTATCAATAAATTTAACTCAAGAATTTTGGAGTTCTAGGATAGGATTGTGAGCCAACAATTCATCATTCATGCTCCCATTATGAGTTTCATTTCCTCCCCTACTTGTAATTAAATGTCACTTTTTCTGTATAAAAGTAAAAAGAAAAAAGTTATCCTAGTGCAGCGATATTTAGTTGACGATGAGTAAAATGCATCCATTTTCTTCATGTGTGATGCACTAGAATAAAATAGTAATCCAGCTGATACTCTTGGCATGGTTTGACCAATAAACATTTTAATGATTTAGTATAGACATGGCAATAAGTTTAATAATGGACCCTTTGCTGTGGAGATAACATTCGTTTGAAGCAGTAATTGTAACTATTTCCAAATAAACACCTGATTATTCTGTGGAAGTGTCTAATAGATATGGAGAATTCACTATACCTATCAGAACATTACGAACCTTTGTTTTTAATTGTTATATTCAAGCCACTCTTTGAGCTCATGTTTGAAGACAATGTCTCTGTTACTATTGGTGATATCTCATATCATTTATTCAACTACTTTTTGTTGCAGATGTTACCTTAGTTTTAAAGCATTGAAAGCTTGCTTAGTCCTAGGTTAGATTGTAGCTCCTGGTTAGGAAAGGATTTTTCCGCATAGTTGCTTGAAAAGTATCCAAATTCTATCAGATTGACCTGAATTAAGGCAATTTAACCTTTACTAGGTTTGGATTATTTGATGTTTTCTGCCTATGGTTAGACATGAAGTAAAAATATAATGTTGTTTTCTGCCTAAGGTTAGACTTAAGGGAAAAATATTTATGAGCATATTGTCAAATGGAAGCTTAAATGATGTCTACCCCTGAAAAGGGAGTTAAGTGACACTGAATTCTGAAGCCAGTTAAATCATAAAGGCACAAATTTTTAACCAGGTAGAGAACCATTATCATCTTCTTTATTCCAAGGAGTGCTGTTTGTGAGCCAATTTTTTTTCTCTCTGCCTTCCAATTATCGATAAGTTTCTTTTTGAATCTCTTGTGTGATCCAAAAAGTATGTTTATCCGAATCCATAGATGAGATGGCATTACCATAGCACAGTGGTAATCTACGTTGGCTTCTTCTCCCCCCCAAATCCATAGATGAGGCCCTTAAGATTATATAAAATTTGAATTTCCCTTCCTTTTTTGAAATTGACAGAACCATGAAATGTGTATATCGTACAATTTTGTTGTTAATCTATTTATCAGGTTGTAATTTTTTCATGAAGTGTGCCTTTTTTTTTTTTTTCTTTTTTTCAGATTTATTCTAAACTATACATTTCTGTTTCATGGAGTTATTAAAGGGCTGACTTTTTATATTATCAAAAAGGTTGGAAGGCATATTTTAAACTTCAAAAGTTTTGGAGCAGCATTGAAAACTAGTTATAGTTTAGAGGGTGGAAAAGTTATCTGGCCTTGAGTAAATCATAAGCGTCTTTTCAGCCAGCAGGCGTTTGGATAATTAAACCCCTTTCTGCTTAAGGTTAGACTTAAGTAACTACACCATTGAAGTTATGTTCAGCTTGACGGCTTCTCCATGCAATGTTAGATAGAAGTTAGAACCACGGGGTTCCTTTAACAATATAACTAAGGATGAGCCGGCATTGGTATCTGCCCCTGGAAAGACCGGTTAAAAGGCACAAAATTTAAAACCAGTTAAATCTAAACTTGAAAGGCACAAATGACTATTTCTATCTGCCTCTGGATAGCACCTGGCTTTAATTTCAGATTCGGGACAAATGATATTGGTTACCGATAGGATGATAAGTTGCAGGAATTCAAAAGCCCGTCAGTTGATATGACAAAACTCACGAACTAATAAAATTTCACAGGGAAATATCATACCAATCCCAAAATTTTATTGCTTGAGAATTGCCTACGCGCCTCCATTTTAGATCGAGGCTACAACTCAAGTCCTGCCCTTTAGTCCCCCCTTTTTTTTATCGTCTAAGCTTTGTTTTATGCATTGTGGCATTCTTCTACATTTTCTTTTCTAGTACAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG

mRNA sequence

ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG

Coding sequence (CDS)

ATGTCCAGATCCATGTTACTTGTCTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGATACCACGGTAAACTCCCAGAAGCAGCAGCAGATATCAACGAGGGAGGAAGCAGTTAAGGAGAAGTCATTTTACACATATTGGATTGAATTGGTGTGTAGATATTGTTGTCACAAGAAAGGAATATCCAAAGGCTCAATGAAGTTGTGCGAAGCCTCCGGGAACAGTTGCAGCAGTGCAGAAGCAGGAACATTACAAATGGGACAGGCCTACGAAATGGACATATTCTTGAGCTCGAACGACATCATGTATTAG

Protein sequence

MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEKSFYTYWIELVCRYCCHKKGISKGSMKLCEASGNSCSSAEAGTLQMGQAYEMDIFLSSNDIMY
Homology
[Close]
BLAST of HG10001250 vs. NCBI nr
Match: XP_038902642.1 (uncharacterized protein LOC120089290 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-15
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEWRQQLVPEVD T+NSQKQQQISTREEAVKEK
Sbjct: 2  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDNTLNSQKQQQISTREEAVKEK 53

[Close]
BLAST of HG10001250 vs. NCBI nr
Match: XP_022944563.1 (uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 uncharacterized protein LOC111483810 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQKQQQISTREEAVKEK
Sbjct: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEK 52

[Close]
BLAST of HG10001250 vs. NCBI nr
Match: KAG7010338.1 (hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-15
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQKQQQISTREEAVKEK
Sbjct: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEK 52

[Close]
BLAST of HG10001250 vs. NCBI nr
Match: XP_016900731.1 (PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC domain-containing protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK-QQQISTREEAVKEK 53
           MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK QQQISTREEAVKEK
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEK 387

[Close]
BLAST of HG10001250 vs. NCBI nr
Match: XP_023512164.1 (uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-14
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEW+QQLVPEV T VNSQKQQQISTREEAVKEK
Sbjct: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVHTRVNSQKQQQISTREEAVKEK 52

[Close]
BLAST of HG10001250 vs. ExPASy TrEMBL
Match: A0A6J1J9H8 (uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQKQQQISTREEAVKEK
Sbjct: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEK 52

[Close]
BLAST of HG10001250 vs. ExPASy TrEMBL
Match: A0A6J1FY60 (uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC111448980 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEW+QQLVPEVDT VNSQKQQQISTREEAVKEK
Sbjct: 1  MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQISTREEAVKEK 52

[Close]
BLAST of HG10001250 vs. ExPASy TrEMBL
Match: A0A5A7V382 (NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00990 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK-QQQISTREEAVKEK 53
           MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK QQQISTREEAVKEK
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEK 387

[Close]
BLAST of HG10001250 vs. ExPASy TrEMBL
Match: A0A1S4DXM3 (NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.9e-15
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK-QQQISTREEAVKEK 53
           MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK QQQISTREEAVKEK
Sbjct: 335 MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEK 387

[Close]
BLAST of HG10001250 vs. ExPASy TrEMBL
Match: A0A0A0KEF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQK-QQQISTREEAVKEK 53
          MSRSMLLVFLFVILIITSQFEWRQQLVPEVD+TVNSQK QQQISTREEAVKEK
Sbjct: 2  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEK 54

[Close]
BLAST of HG10001250 vs. TAIR 10
Match: AT3G44280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDT-TVNSQKQQQISTREEAVKEK 53
          MS+ +LLV L VILI+TSQFEWRQ LV E+DT T +SQKQQQIS REEAVKEK
Sbjct: 1  MSKPVLLVCLLVILIVTSQFEWRQPLV-ELDTATSSSQKQQQISDREEAVKEK 52

[Close]
BLAST of HG10001250 vs. TAIR 10
Match: AT5G22280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVN-SQKQQQISTREEAVKEK 53
          MSR ++LVFL VILI+TSQFEWRQ L+ E+D   + SQK QQI+ REEAVKEK
Sbjct: 1  MSRPIMLVFLLVILIVTSQFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEK 52

[Close]
BLAST of HG10001250 vs. TAIR 10
Match: AT5G22280.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-09
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVN-SQKQQQISTREEAVKEK 53
          MSR ++LVFL VILI+TSQFEWRQ L+ E+D   + SQK QQI+ REEAVKEK
Sbjct: 1  MSRPIMLVFLLVILIVTSQFEWRQPLL-ELDAAPSLSQKHQQIAKREEAVKEK 52

The following BLAST results are available for this feature:
BLAST of HG10001250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902642.13.5e-1596.15uncharacterized protein LOC120089290 [Benincasa hispida][more]
XP_022944563.14.5e-1596.15uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 unchar... [more]
KAG7010338.14.5e-1596.15hypothetical protein SDJN02_27131, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_016900731.11.0e-1498.11PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC dom... [more]
XP_023512164.12.9e-1494.23uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo][more]
BLAST of HG10001250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J9H82.2e-1596.15uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810... [more]
A0A6J1FY602.2e-1596.15uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC1114489... [more]
A0A5A7V3824.9e-1598.11NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A1S4DXM34.9e-1598.11NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV... [more]
A0A0A0KEF21.4e-1496.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1[more]
BLAST of HG10001250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G44280.12.7e-1075.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G22280.16.7e-0967.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G22280.36.7e-0967.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34564PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Gcoord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001250.1HG10001250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding