Cucsat.G9609.T35 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G9609.T35
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Transcription termination factor MTERF5
Location	ctg1673: 3381067 .. 3386280 (-)
RNA-Seq Expression	Cucsat.G9609.T35
Synteny	Cucsat.G9609.T35

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTCATTCATCTCTATAGGGTGGGGAATGGGATGTTCGTGGAGCTCCAAAGCCCTAACCCTAACCCTAACCCTTCAATTTCTTCAATCCAATTCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTACATTTCATCCATAAACGTTTTCTCACCACCATTTCTACTTCTACATTGCCTTCCCCTCTATTTCTACCGTTCAATTCCTCAAAAATCCATCTGCCCTTTATTCAGGATCTCCTACTCCCAACGGTCCAAAGCTCCAATTCCATGAAATAGACATCCAGCAGTACGGAGCCATTATCGGTTTCTTGAAATCACATGGGTTCGAGAATCCACAGATCGCCAAGTTGGTTTCCAGGCAACCTTCGATCCTTCAATCCAGAGTCGCCACTCTGAAACCTAAATTTGAGATCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTGTCAAACCCTTCGGTTCTTCACAGGAGCTTAGATTCTCAGTTGAAACCATCATTTCGTATCATAAAGGAAATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTACTTCACATGTTCAGAGGAGAAAATGAGGGACGTTGCAGATTTCTGTTCCAACACTGCAATGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATCAAAAAGATTGCTTCGGCATTTGTGAAAGGGGAAGGATATTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGCTGCAGCCGAAACCAAATCTGTTGTATAGGATTGGAAAGCTTGAAGTTTAGATTTGAGCATCATGATCTTCAAAGGGGGAGAGAATTTTTGTGGTTATTGAGCCTTCTGTTTCAGCTAACATTGCTTCTTGAGCCTTTTCAGGTGGGAGAGTTGTGTTGTCTTTCCATCCAAATTAAGACAGGTAAATCTATTTGGTGTACATTTCTTCATAGACGTGTTAATCTTGAAATTGGAGGCCTTTTTGTTTTTCCCTTTCCTAATCTTTTACTCTTTGCTTGAACATTTGTAAGTTTGTAGACTAATTTAGAATCAAATGATATTGAAATAGAGGTGATTTTGTTCATTCATACTATGAGATGAGATGAGAGACATTAGACTTTTTGAATATTCTGAGTTGGACTCTTATTCTTTTGCTATTCCAAATAGATTTTCATATCTTGGGTAAATGACAAACATTGTCATGAAATTCATTTTTATTTAAACGGTTTGAAAATTTCAAACCACTAAAGCTTAATTATAAGGATCATCATAGGCAATATTCGTTAAACTTTCCCACCTCCGTTCGAGTTCTTTTTTTATTATATTTTGTAAATAGTTTGATGGTTGTGAAAATGTTTCCCGGTTATTTTTTCTTTCTTTTTATTCTTTTTATTGTTTTTTTTTCTTTTGGTAAATTCAAGGACTCGAGTCTTCAACTTTAGTGTCTTTATGTAATATGTATAAATAAAACTAATTAAGGTTTAATATTTGTAGGTAGCTTAGTGGTAACTGTGCTTGTCACATGTCAATAAAATTTTGGGATCTGGATTCGCCACTCTATATATATTTGAATGGTTCGATTGAACTTATTCTTAACTTTAGATTAGGGTAGGGAGTTTCGTCTATTAGCGTAAGTTCAATTCACGTAATTGAATATAGTATTGCCATACCATAATATTACATGTAACAACAAGATAAGTTTGATCTTACTTATTTTCTTTGTAGGTGAATGAAGACTTCCTATACTAACTTAAATATCCTAATGCAATAGGATTGGTACCGCATCGTGTGAGAATCTGTTTCACAAGTCAAGAAGAGAATAATCAAGACAAGACTCGCTAGGAAGGTCAAGCCTACAAGAACCTGTGGCAAACCCTAACTTCGGTGACATTCAAGCGCCAACGATATTCACAAAAGCAATGTCACGTATCCATACCCTATGATATTTTTGCAAAAATAAAAGAGTTCAAAAAAATATTTAAATGGATAAATTAGCATTTTTTATACCATTTAAAAGGTTTGTTATTTATATTATGTTTAGTTAGAAACACTTTTGTTATACTCAATGGTGCAAAAACTTGGTTTTTGAAAATATTGGTAGAGAAAACAATATATAGGTATATATGAACATTTTTCTATTGACGAGTACATCTACATGGTGCAAAGAGTACCATAAAATCGATATTGGATTTGCTTTCAGACTACTCCCAATTTACAATTGAGTAGACGTCGATAGGATACTATTGTGTTGTGGATGTTTTGTGAATGACGTCGTGGGCTGCTTGTTTTGCGAGAAATCTGTCATTTGCCAATTTATTTTATTGAGATGGACGTGGAAATGAAGAACATGAAGTTTGAGAGGAAATATTGGGATTTGAGGATGGAGAACTAGGTGAATTTTTTTTAGAGTATGAACATTTAAGGCAATTTTTCGTATTAACAATTAAAATAAAATTTTATCATTTATTCAAAGTAAACCTTTAAATTTGTAATTTTATTAGTCGGTCTCTCTCAGTTAATATTTTCTACTTTACCCTACTTTTGCCATTTGTTTATATTCTTACGTTATATAAATTTAGATGTATTTGTCATTTTTCTAAACAATGATATTAATTTTAGAATTAAACGATGAAAGTTATTTGTAAGTAAAATAAATAATGCATTTCCTAATAGGGATAATTAAAAAATATCTAATATCCATAACCATTCCTCCATTATTTGAAAGTAATTATTGAAATAAAATTATGTATCTATATAAATAATAAAAATAATATACGAACTTCAAAATTCCATATCAAAATTCAACTTTTTAAGCTTTTAAATTTTATTTTCTTAAGTTTTACTCAAGGAAGGAAATTCGTCTTTTCTTCGCACGAAAAATATAAATTCATCTTTTAACAAAAGATAAAAGAAAAGTTCTAATATATTCCTTTATTTTTATTATTTAAGCCAAAATATAATATTCTTTTTATTTTTAATTAGGTAAATAAACAAAATTTTTCTTTTTCTTTTTACATATATATTAAAAATAAAATTTATATTTATTCGCTCAAAACAAAATTTATTAACTACTTAGATTAAATAATATTTTTTAATACAAAAATTATAAACAAAATTTCATTTTAATATTTAATTTATTTGACTTATCTTTCAAAAACTATAATAATAATTTAAAAAACATTTTAAAATAAAGGGTGCGATTTTAGGCGATGGGCCAAACAACCCCAATTGGGGATAGATGTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCTTTCTTCCTTTTCTTCATTCCAAACCCCAATATGTCCAAAATTTCCTCCACACTTCTTCTACATTTCATCCATAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTCTTTCTACCATCCAATTCCTCACTAATTCATGCGGCCTTTCTTCTGGATCTCCTACCTCCGCCGGTCGAAAGCTCCATTTCGATGAAAAACACATCCACCAGTACGGAGCCATCATCGGTTTCTTCAAATCTCATGGATTCGAGTATCCACAGATCTCCAATTTGATCTCGAGGCGACCTTCGATCCTTCAATCCAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTAATTTTATCAACCCCATGGGTGCTTAGCAAAAGCTTAGATTCCCAGTTGAAACCATCATTTTTTTTCATTAAGGAAATTCTTGAATCGGATGAACAAGTAACTGCTGCTGTTATTTATCGTTTTCCAAGCCTTCTAATTAGTGATTGGCGGGGTAATTTTAAATCTAGCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAAAGAAGATGATTGCATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAATGATTGATGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACATGCTCAGAGGAGAAATTGAGGGATGTTGCAGATTTTTGTTTGAACGCTGCAAAGTTGGATCCAGTAACTCTAATTACTTACCCTGAGTTCTTCAAGTCTTCAATCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATAAAAAAGATTGGTCCGGTGCTTTTACGAGGGGAGAGAGAATTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATGTTCTTATAGTTTAAATTTGAGCATCATGATCTTCAAAAGGGGAGAGCATTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAACAACACTACCTCTTGAGCTTTTCAAAATCTCTCTCTCTCTCTCTCTCTGTGTGTTTTCAGGTGGAGAGTTGTGTTGTTTTTGCATCCAAATCAAGGCAGTTAGGTACGTAAATCTATTTGATGTATATTTTGTTCATAGACATGTTAAACTTGAAATTGGAGGCCTTTCTGCTTCAACTTTTGTAAGTTTGTAGACTAATTTTTGAATCTAATGATCTTG

Coding sequence (CDS)

ATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACATGCTCAGAGGAGAAATTGAGGGATGTTGCAGATTTTTGTTTGAACGCTGCAAAGTTGGATCCAGTAACTCTAATTACTTACCCTGAGTTCTTCAAGTCTTCAATCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATAAAAAAGATTGGTCCGGTGCTTTTACGAGGGGAGAGAGAATTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAG

Protein sequence

MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVDLMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLLKIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV

Homology

[Close]

BLAST of Cucsat.G9609.T35 vs. NCBI nr
Match: XP_031742250.1 (uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharacterized protein LOC116404132 [Cucumis sativus])

HSP 1 Score: 398 bits (1022), Expect = 8.34e-139
Identity = 202/227 (88.99%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD
Sbjct: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
           LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSE EIF+AFK++
Sbjct: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKF 120

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P Y TCSEEK+RDVADFC N A LDP TLI+YP  FK S+EKRLQPRYKVLEVLKVKNLL
Sbjct: 121 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 180

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           KIKKI    ++GE  FVEKYVVKHLDEIPNLMDIYRGN AAETKSVV
Sbjct: 181 KIKKIASAFVKGEGYFVEKYVVKHLDEIPNLMDIYRGNAAAETKSVV 227

[Close]

BLAST of Cucsat.G9609.T35 vs. NCBI nr
Match: KAE8648644.1 (hypothetical protein Csa_008356 [Cucumis sativus])

HSP 1 Score: 398 bits (1022), Expect = 8.09e-137
Identity = 202/227 (88.99%), Postives = 210/227 (92.51%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD
Sbjct: 131 MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 190

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
           LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSE EIF+AFK++
Sbjct: 191 LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKF 250

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P Y TCSEEK+RDVADFC N A LDP TLI+YP  FK S+EKRLQPRYKVLEVLKVKNLL
Sbjct: 251 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 310

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           KIKKI    ++GE  FVEKYVVKHLDEIPNLMDIYRGN AAETKSVV
Sbjct: 311 KIKKIASAFVKGEGYFVEKYVVKHLDEIPNLMDIYRGNAAAETKSVV 357

[Close]

BLAST of Cucsat.G9609.T35 vs. NCBI nr
Match: XP_011655534.2 (transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KAE8648645.1 hypothetical protein Csa_007996 [Cucumis sativus])

HSP 1 Score: 361 bits (926), Expect = 5.58e-122
Identity = 188/228 (82.46%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MLVSDEKVTAA-IFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKV 60
           +L SDE+VTAA I+R   LL    +G  +S+ D+L SEGVPSRNI K+I LNPRT ++K 
Sbjct: 147 ILESDEQVTAAVIYRFPSLLISDWRGNFKSSSDILASEGVPSRNIKKMIALNPRTFMQKA 206

Query: 61  DLMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKR 120
           D MI AV+TVKE G+EPK  MF++A+   LSMNDSTWKKKINVMKSLGWSEKEIFSAFKR
Sbjct: 207 DRMIDAVKTVKELGIEPKARMFIYALFVRLSMNDSTWKKKINVMKSLGWSEKEIFSAFKR 266

Query: 121 YPFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNL 180
           YPFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNL
Sbjct: 267 YPFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNL 326

Query: 181 LKIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           LKIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV
Sbjct: 327 LKIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 374

[Close]

BLAST of Cucsat.G9609.T35 vs. NCBI nr
Match: XP_031741760.1 (transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 347 bits (891), Expect = 2.23e-117
Identity = 175/227 (77.09%), Postives = 197/227 (86.78%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML +DE VTAAI R TWLLTY+SKGT+RSNID+LVSEGVPSRNI K+IELNPRTI++ VD
Sbjct: 99  MLETDENVTAAICRYTWLLTYSSKGTLRSNIDILVSEGVPSRNIAKMIELNPRTIVQNVD 158

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +I AV+TVKE GVEPKD  F+HAV  VLSM+DS WKKKINVMKSLGWSEKEI +AFKRY
Sbjct: 159 RIIDAVKTVKELGVEPKDFKFVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRY 218

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P YLTCSEEK+RDVADFC N AKLDP TLI YP  FK S++KRL+PRYKVLEVLKVKNLL
Sbjct: 219 PPYLTCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLL 278

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           K +K   +  RGER+FVE Y+VKHLDEIPNLMDIYRGNVA+ETKSV+
Sbjct: 279 KNEKSVQLFFRGERDFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 325

[Close]

BLAST of Cucsat.G9609.T35 vs. NCBI nr
Match: KAE8648669.1 (hypothetical protein Csa_007829 [Cucumis sativus])

HSP 1 Score: 347 bits (891), Expect = 1.11e-116
Identity = 175/227 (77.09%), Postives = 197/227 (86.78%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML +DE VTAAI R TWLLTY+SKGT+RSNID+LVSEGVPSRNI K+IELNPRTI++ VD
Sbjct: 147 MLETDENVTAAICRYTWLLTYSSKGTLRSNIDILVSEGVPSRNIAKMIELNPRTIVQNVD 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +I AV+TVKE GVEPKD  F+HAV  VLSM+DS WKKKINVMKSLGWSEKEI +AFKRY
Sbjct: 207 RIIDAVKTVKELGVEPKDFKFVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRY 266

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P YLTCSEEK+RDVADFC N AKLDP TLI YP  FK S++KRL+PRYKVLEVLKVKNLL
Sbjct: 267 PPYLTCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLL 326

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           K +K   +  RGER+FVE Y+VKHLDEIPNLMDIYRGNVA+ETKSV+
Sbjct: 327 KNEKSVQLFFRGERDFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 373

[Close]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL
Match: A0A1S4DW22 (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 340 bits (872), Expect = 1.86e-115
Identity = 168/227 (74.01%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SD+KVTAAI R +WLLT  S GT+RSNIDVLVSEGVPS NI ++I LNPR+++RKVD
Sbjct: 55  MLGSDKKVTAAICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNIAQIIALNPRSVMRKVD 114

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MI AV+TVKE GVEPKDGMF++AV   +SM+DSTWKKKINVMKSLGWSE EIF+AFKR+
Sbjct: 115 RMIRAVKTVKELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRF 174

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P +LTCSEEK+RD+ADFCLN AKLDP TLI+YP+FF  S+ KRLQPRYKVLEVLK+KNLL
Sbjct: 175 PRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLL 234

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           K K IG + + GER FVEKY+VKH D+IPNL+DIY GNV AETKSV+
Sbjct: 235 KTKNIGLLFVEGERRFVEKYIVKHFDKIPNLIDIYLGNVKAETKSVL 281

[Close]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL
Match: A0A1S3BEV9 (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 340 bits (872), Expect = 4.11e-114
Identity = 168/227 (74.01%), Postives = 196/227 (86.34%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SD+KVTAAI R +WLLT  S GT+RSNIDVLVSEGVPS NI ++I LNPR+++RKVD
Sbjct: 147 MLGSDKKVTAAICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNIAQIIALNPRSVMRKVD 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MI AV+TVKE GVEPKDGMF++AV   +SM+DSTWKKKINVMKSLGWSE EIF+AFKR+
Sbjct: 207 RMIRAVKTVKELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRF 266

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P +LTCSEEK+RD+ADFCLN AKLDP TLI+YP+FF  S+ KRLQPRYKVLEVLK+KNLL
Sbjct: 267 PRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLL 326

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV 227
           K K IG + + GER FVEKY+VKH D+IPNL+DIY GNV AETKSV+
Sbjct: 327 KTKNIGLLFVEGERRFVEKYIVKHFDKIPNLIDIYLGNVKAETKSVL 373

[Close]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL
Match: A0A1S3BDZ4 (uncharacterized protein LOC103488851 OS=Cucumis melo OX=3656 GN=LOC103488851 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 9.07e-113
Identity = 168/226 (74.34%), Postives = 193/226 (85.40%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKV AAI R +W+L+  SKGTMRSNIDVLVSEGVPS NI K+I LNPR+I+R VD
Sbjct: 1   MLESDEKVAAAICRASWILSANSKGTMRSNIDVLVSEGVPSTNIAKMIALNPRSIMRNVD 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +IHAV+TVKE GVEPKD  F++AV AV SM+DS+WKKKINVMKSLGWSEKEIF+AFK+ 
Sbjct: 61  RIIHAVKTVKELGVEPKDRTFVYAVSAVGSMSDSSWKKKINVMKSLGWSEKEIFTAFKKD 120

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P +LTCSEEK+RDVADFC N AKLDP ++I YP+FF+ S++KRL+PRYKV EVLKVKNLL
Sbjct: 121 PTFLTCSEEKMRDVADFCFNTAKLDPESVIIYPKFFQCSVDKRLKPRYKVFEVLKVKNLL 180

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSV 226
           K K I    +RGEREFVE  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 181 KNKNIARWFIRGEREFVENNVVKHLDEIPNLMDIYRGNDASETKSV 226

[Close]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL
Match: A0A1S3BH03 (uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=3 SV=1)

HSP 1 Score: 329 bits (844), Expect = 5.61e-112
Identity = 171/228 (75.00%), Postives = 191/228 (83.77%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKVT AI R +W+L+  SKGTMRSN DVLVSEGVPS NI K+I LNPR+I+R V 
Sbjct: 1   MLESDEKVTVAICRASWILSANSKGTMRSNFDVLVSEGVPSTNIAKMIALNPRSIMRNVG 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MIHAV+TVKE GVEPKD  F++AV AV SMN S+WKKKINVMKSLGWSEKEIF+AFKRY
Sbjct: 61  RMIHAVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRY 120

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P  LTCSEEK+RDVADFC N AKLDP TLI+YP FF  S++KRL+PRYKVLEVLKVKNLL
Sbjct: 121 PLCLTCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLL 180

Query: 181 KIKKIGPV--LLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSV 226
           K KKI      ++GEREFV+  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 181 KNKKIALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 228

[Close]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL
Match: A0A5A7SU45 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002650 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 1.27e-110
Identity = 168/226 (74.34%), Postives = 193/226 (85.40%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKV AAI R +W+L+  SKGTMRSNIDVLVSEGVPS NI K+I LNPR+I+R VD
Sbjct: 147 MLESDEKVAAAICRASWILSANSKGTMRSNIDVLVSEGVPSTNIAKMIALNPRSIMRNVD 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +IHAV+TVKE GVEPKD  F++AV AV SM+DS+WKKKINVMKSLGWSEKEIF+AFK+ 
Sbjct: 207 RIIHAVKTVKELGVEPKDRTFVYAVSAVGSMSDSSWKKKINVMKSLGWSEKEIFTAFKKD 266

Query: 121 PFYLTCSEEKLRDVADFCLNAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLL 180
           P +LTCSEEK+RDVADFC N AKLDP ++I YP+FF+ S++KRL+PRYKV EVLKVKNLL
Sbjct: 267 PTFLTCSEEKMRDVADFCFNTAKLDPESVIIYPKFFQCSVDKRLKPRYKVFEVLKVKNLL 326

Query: 181 KIKKIGPVLLRGEREFVEKYVVKHLDEIPNLMDIYRGNVAAETKSV 226
           K K I    +RGEREFVE  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 327 KNKNIARWFIRGEREFVENNVVKHLDEIPNLMDIYRGNDASETKSV 372

The following BLAST results are available for this feature:

BLAST of Cucsat.G9609.T35 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G9609.T35 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742250.1	8.34e-139	88.99	uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharact...	[more]
KAE8648644.1	8.09e-137	88.99	hypothetical protein Csa_008356 [Cucumis sativus]	[more]
XP_011655534.2	5.58e-122	82.46	transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KA...	[more]
XP_031741760.1	2.23e-117	77.09	transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus]	[more]
KAE8648669.1	1.11e-116	77.09	hypothetical protein Csa_007829 [Cucumis sativus]	[more]

BLAST of Cucsat.G9609.T35 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DW22	1.86e-115	74.01	transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumi...	[more]
A0A1S3BEV9	4.11e-114	74.01	transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumi...	[more]
A0A1S3BDZ4	9.07e-113	74.34	uncharacterized protein LOC103488851 OS=Cucumis melo OX=3656 GN=LOC103488851 PE=...	[more]
A0A1S3BH03	5.61e-112	75.00	uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=...	[more]
A0A5A7SU45	1.27e-110	74.34	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 9..40 e-value: 160.0 score: 10.2 coord: 147..177 e-value: 1.6 score: 17.8 coord: 45..75 e-value: 1500.0 score: 2.4 coord: 79..109 e-value: 0.85 score: 18.7 coord: 114..145 e-value: 4.3 score: 16.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 23..177 e-value: 3.0E-20 score: 72.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..219
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..210 e-value: 1.1E-37 score: 131.6
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 2..219

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G9609	Cucsat.G9609	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T35.E1	Cucsat.G9609.T35.E1	exon
Cucsat.G9609.T35.E2	Cucsat.G9609.T35.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T35.C2	Cucsat.G9609.T35.C2	CDS
Cucsat.G9609.T35.C1	Cucsat.G9609.T35.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T35	Cucsat.G9609.T35-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003690	double-stranded DNA binding