Cucsat.G9609.T34 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G9609.T34
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTranscription termination factor MTERF5
Locationctg1673: 3381070 .. 3386259 (-)
RNA-Seq ExpressionCucsat.G9609.T34
SyntenyCucsat.G9609.T34
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGGGAATGGGATGTTCGTGGAGCTCCAAAGCCCTAACCCTAACCCTAACCCTTCAATTTCTTCAATCCAATTCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTACATTTCATCCATAAACGTTTTCTCACCACCATTTCTACTTCTACATTGCCTTCCCCTCTATTTCTACCGTTCAATTCCTCAAAAATCCATCTGCCCTTTATTCAGGATCTCCTACTCCCAACGGTCCAAAGCTCCAATTCCATGAAATAGACATCCAGCAGTACGGAGCCATTATCGGTTTCTTGAAATCACATGGGTTCGAGAATCCACAGATCGCCAAGTTGGTTTCCAGGCAACCTTCGATCCTTCAATCCAGAGTCGCCACTCTGAAACCTAAATTTGAGATCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTGTCAAACCCTTCGGTTCTTCACAGGAGCTTAGATTCTCAGTTGAAACCATCATTTCGTATCATAAAGGAAATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTACTTCACATGTTCAGAGGAGAAAATGAGGGACGTTGCAGATTTCTGTTCCAACACTGCAATGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATCAAAAAGATTGCTTCGGCATTTGTGAAAGGGGAAGGATATTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGCTGCAGCCGAAACCAAATCTGTTGTATAGGATTGGAAAGCTTGAAGTTTAGATTTGAGCATCATGATCTTCAAAGGGGGAGAGAATTTTTGTGGTTATTGAGCCTTCTGTTTCAGCTAACATTGCTTCTTGAGCCTTTTCAGGTGGGAGAGTTGTGTTGTCTTTCCATCCAAATTAAGACAGGTAAATCTATTTGGTGTACATTTCTTCATAGACGTGTTAATCTTGAAATTGGAGGCCTTTTTGTTTTTCCCTTTCCTAATCTTTTACTCTTTGCTTGAACATTTGTAAGTTTGTAGACTAATTTAGAATCAAATGATATTGAAATAGAGGTGATTTTGTTCATTCATACTATGAGATGAGATGAGAGACATTAGACTTTTTGAATATTCTGAGTTGGACTCTTATTCTTTTGCTATTCCAAATAGATTTTCATATCTTGGGTAAATGACAAACATTGTCATGAAATTCATTTTTATTTAAACGGTTTGAAAATTTCAAACCACTAAAGCTTAATTATAAGGATCATCATAGGCAATATTCGTTAAACTTTCCCACCTCCGTTCGAGTTCTTTTTTTATTATATTTTGTAAATAGTTTGATGGTTGTGAAAATGTTTCCCGGTTATTTTTTCTTTCTTTTTATTCTTTTTATTGTTTTTTTTTCTTTTGGTAAATTCAAGGACTCGAGTCTTCAACTTTAGTGTCTTTATGTAATATGTATAAATAAAACTAATTAAGGTTTAATATTTGTAGGTAGCTTAGTGGTAACTGTGCTTGTCACATGTCAATAAAATTTTGGGATCTGGATTCGCCACTCTATATATATTTGAATGGTTCGATTGAACTTATTCTTAACTTTAGATTAGGGTAGGGAGTTTCGTCTATTAGCGTAAGTTCAATTCACGTAATTGAATATAGTATTGCCATACCATAATATTACATGTAACAACAAGATAAGTTTGATCTTACTTATTTTCTTTGTAGGTGAATGAAGACTTCCTATACTAACTTAAATATCCTAATGCAATAGGATTGGTACCGCATCGTGTGAGAATCTGTTTCACAAGTCAAGAAGAGAATAATCAAGACAAGACTCGCTAGGAAGGTCAAGCCTACAAGAACCTGTGGCAAACCCTAACTTCGGTGACATTCAAGCGCCAACGATATTCACAAAAGCAATGTCACGTATCCATACCCTATGATATTTTTGCAAAAATAAAAGAGTTCAAAAAAATATTTAAATGGATAAATTAGCATTTTTTATACCATTTAAAAGGTTTGTTATTTATATTATGTTTAGTTAGAAACACTTTTGTTATACTCAATGGTGCAAAAACTTGGTTTTTGAAAATATTGGTAGAGAAAACAATATATAGGTATATATGAACATTTTTCTATTGACGAGTACATCTACATGGTGCAAAGAGTACCATAAAATCGATATTGGATTTGCTTTCAGACTACTCCCAATTTACAATTGAGTAGACGTCGATAGGATACTATTGTGTTGTGGATGTTTTGTGAATGACGTCGTGGGCTGCTTGTTTTGCGAGAAATCTGTCATTTGCCAATTTATTTTATTGAGATGGACGTGGAAATGAAGAACATGAAGTTTGAGAGGAAATATTGGGATTTGAGGATGGAGAACTAGGTGAATTTTTTTTAGAGTATGAACATTTAAGGCAATTTTTCGTATTAACAATTAAAATAAAATTTTATCATTTATTCAAAGTAAACCTTTAAATTTGTAATTTTATTAGTCGGTCTCTCTCAGTTAATATTTTCTACTTTACCCTACTTTTGCCATTTGTTTATATTCTTACGTTATATAAATTTAGATGTATTTGTCATTTTTCTAAACAATGATATTAATTTTAGAATTAAACGATGAAAGTTATTTGTAAGTAAAATAAATAATGCATTTCCTAATAGGGATAATTAAAAAATATCTAATATCCATAACCATTCCTCCATTATTTGAAAGTAATTATTGAAATAAAATTATGTATCTATATAAATAATAAAAATAATATACGAACTTCAAAATTCCATATCAAAATTCAACTTTTTAAGCTTTTAAATTTTATTTTCTTAAGTTTTACTCAAGGAAGGAAATTCGTCTTTTCTTCGCACGAAAAATATAAATTCATCTTTTAACAAAAGATAAAAGAAAAGTTCTAATATATTCCTTTATTTTTATTATTTAAGCCAAAATATAATATTCTTTTTATTTTTAATTAGGTAAATAAACAAAATTTTTCTTTTTCTTTTTACATATATATTAAAAATAAAATTTATATTTATTCGCTCAAAACAAAATTTATTAACTACTTAGATTAAATAATATTTTTTAATACAAAAATTATAAACAAAATTTCATTTTAATATTTAATTTATTTGACTTATCTTTCAAAAACTATAATAATAATTTAAAAAACATTTTAAAATAAAGGGTGCGATTTTAGGCGATGGGCCAAACAACCCCAATTGGGGATAGATGTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCTTTCTTCCTTTTCTTCATTCCAAACCCCAATATGTCCAAAATTTCCTCCACACTTCTTCTACATTTCATCCATAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTCTTTCTACCATCCAATTCCTCACTAATTCATGCGGCCTTTCTTCTGGATCTCCTACCTCCGCCGGTCGAAAGCTCCATTTCGATGAAAAACACATCCACCAGTACGGAGCCATCATCGGTTTCTTCAAATCTCATGGATTCGAGTATCCACAGATCTCCAATTTGATCTCGAGGCGACCTTCGATCCTTCAATCCAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTAATTTTATCAACCCCATGGGTGCTTAGCAAAAGCTTAGATTCCCAGTTGAAACCATCATTTTTTTTCATTAAGGAAATTCTTGAATCGGATGAACAAGTAACTGCTGCTGTTATTTATCGTTTTCCAAGCCTTCTAATTAGTGATTGGCGGGGTAATTTTAAATCTAGCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAAAGAAGATGATTGCATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAATGATTGATGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACATGCTCAGAGGAGAAATTGAGGGATGTTGCAGATTTTTGTTTGAACGCTGCAAAGTTGGATCCAGTAACTCTAATTACTTACCCTGAGTTCTTCAAGTCTTCAATCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATAAAAAAGATTGGTCCGGTGCTTTTACGAGGGGAGAGAGAATTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATGTTCTTATAGTTTAAATTTGAGCATCATGATCTTCAAAAGGGGAGAGCATTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAACAACACTACCTCTTGAGCTTTTCAAAATCTCTCTCTCTCTCTCTCTCTGTGTGTTTTCAGGTGGAGAGTTGTGTTGTTTTTGCATCCAAATCAAGGCAGTTAGGTACGTAAATCTATTTGATGTATATTTTGTTCATAGACATGTTAAACTTGAAATTGGAGGCCTTTCTGCTTCAACTTTTGTAAGTTTGTAGACTAATTTTTGAATCTAATGATC

Coding sequence (CDS)

ATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTACTTCACATGTTCAGAGGAGAAAATGAGGGACGTTGCAGATTTCTGTTCCAACACTGCAATGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATCAAAAAGATTGCTTCGGCATTTGTGAAAGGGGAAGGATATTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAG

Protein sequence

MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEKYVVKHLDEIPNLMDIYRGNVAAETKSVV
Homology
[Close]
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match: XP_031742250.1 (uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharacterized protein LOC116404132 [Cucumis sativus])

HSP 1 Score: 296 bits (759), Expect = 3.98e-100
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS
Sbjct: 80  MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 139

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 120
           NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK
Sbjct: 140 NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 199

Query: 121 YVVKHLDEIPNLMDIYRGNVAAETKSVV 148
           YVVKHLDEIPNLMDIYRGN AAETKSVV
Sbjct: 200 YVVKHLDEIPNLMDIYRGNAAAETKSVV 227

[Close]
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match: KAE8648644.1 (hypothetical protein Csa_008356 [Cucumis sativus])

HSP 1 Score: 296 bits (759), Expect = 2.95e-98
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS
Sbjct: 210 MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 269

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 120
           NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK
Sbjct: 270 NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 329

Query: 121 YVVKHLDEIPNLMDIYRGNVAAETKSVV 148
           YVVKHLDEIPNLMDIYRGN AAETKSVV
Sbjct: 330 YVVKHLDEIPNLMDIYRGNAAAETKSVV 357

[Close]
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match: XP_031741759.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 2.31e-80
Identity = 122/147 (82.99%), Postives = 133/147 (90.48%), Query Frame = 0 

Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCSN 61
           F+HAV  VLSM+DS WKKKINVMKSLGWSENEIFTAFKKFPPY TCSE+K+R+VADFC N
Sbjct: 189 FVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRNVADFCFN 248

Query: 62  TAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEKY 121
           TA LDPGTLISYPVLFKYSVEKRL+PRYKVLEVLKVKNLLK +K A  F +GE  FVE Y
Sbjct: 249 TAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENY 308

Query: 122 VVKHLDEIPNLMDIYRGNVAAETKSVV 148
           +VKHLDEIPNLMDIYRGNVA+ETKSV+
Sbjct: 309 IVKHLDEIPNLMDIYRGNVASETKSVL 335

[Close]
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match: KAE8648655.1 (hypothetical protein Csa_008541 [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 7.23e-80
Identity = 122/147 (82.99%), Postives = 133/147 (90.48%), Query Frame = 0 

Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCSN 61
           F+HAV  VLSM+DS WKKKINVMKSLGWSENEIFTAFKKFPPY TCSE+K+R+VADFC N
Sbjct: 227 FVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRNVADFCFN 286

Query: 62  TAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEKY 121
           TA LDPGTLISYPVLFKYSVEKRL+PRYKVLEVLKVKNLLK +K A  F +GE  FVE Y
Sbjct: 287 TAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLLKNEKSAQLFFRGEREFVENY 346

Query: 122 VVKHLDEIPNLMDIYRGNVAAETKSVV 148
           +VKHLDEIPNLMDIYRGNVA+ETKSV+
Sbjct: 347 IVKHLDEIPNLMDIYRGNVASETKSVL 373

[Close]
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match: XP_031741755.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis sativus] >KGN52212.2 hypothetical protein Csa_007927 [Cucumis sativus])

HSP 1 Score: 246 bits (628), Expect = 3.63e-78
Identity = 124/149 (83.22%), Postives = 134/149 (89.93%), Query Frame = 0 

Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCSN 61
           F+HAVR VLSM DSTWKKKINVMKSLG SE EIF+AFK+FPPY TCSEEK+RDVADFCSN
Sbjct: 228 FVHAVRVVLSMGDSTWKKKINVMKSLGVSEKEIFSAFKRFPPYLTCSEEKLRDVADFCSN 287

Query: 62  TAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEKY 121
           TA LDP +LISYPVLFKYSV KRLQPR KV+EVLK+KNLLKIK+IAS FVKGE  FVEKY
Sbjct: 288 TAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLLKIKRIASVFVKGEKEFVEKY 347

Query: 122 VVKHLDEIPNLMDIYRGNVAAE--TKSVV 148
           +VKHLDEIPNLMDIY+GNV AE  TKSVV
Sbjct: 348 IVKHLDEIPNLMDIYKGNVEAEAETKSVV 376

[Close]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match: A0A1S4DW22 (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.72e-75
Identity = 114/148 (77.03%), Postives = 127/148 (85.81%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MF++AV   +SM+DSTWKKKINVMKSLGWSENEIFTAFK+FP + TCSEEKMRD+ADFC 
Sbjct: 134 MFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRFPRFLTCSEEKMRDIADFCL 193

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 120
           NTA LDPGTLISYP  F YSV KRLQPRYKVLEVLK+KNLLK K I   FV+GE  FVEK
Sbjct: 194 NTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLLKTKNIGLLFVEGERRFVEK 253

Query: 121 YVVKHLDEIPNLMDIYRGNVAAETKSVV 148
           Y+VKH D+IPNL+DIY GNV AETKSV+
Sbjct: 254 YIVKHFDKIPNLIDIYLGNVKAETKSVL 281

[Close]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match: A0A1S3BEV9 (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 2.72e-74
Identity = 114/148 (77.03%), Postives = 127/148 (85.81%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MF++AV   +SM+DSTWKKKINVMKSLGWSENEIFTAFK+FP + TCSEEKMRD+ADFC 
Sbjct: 226 MFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRFPRFLTCSEEKMRDIADFCL 285

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 120
           NTA LDPGTLISYP  F YSV KRLQPRYKVLEVLK+KNLLK K I   FV+GE  FVEK
Sbjct: 286 NTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLLKTKNIGLLFVEGERRFVEK 345

Query: 121 YVVKHLDEIPNLMDIYRGNVAAETKSVV 148
           Y+VKH D+IPNL+DIY GNV AETKSV+
Sbjct: 346 YIVKHFDKIPNLIDIYLGNVKAETKSVL 373

[Close]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match: A0A1S3CSA2 (uncharacterized protein LOC103504258 OS=Cucumis melo OX=3656 GN=LOC103504258 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 7.95e-73
Identity = 116/149 (77.85%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MF +AV   LSM+DSTWKKK+ VMKSLGWSE EIFTAFKK P Y  CSE+KMRDVADFC 
Sbjct: 19  MFAYAVFVRLSMSDSTWKKKVTVMKSLGWSEKEIFTAFKKDPNYLGCSEKKMRDVADFCF 78

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASA--FVKGEGYFV 120
           NTA LDPGT+ISYPV FKYSV+KRL+PRYKVLEVLKVKNLLK KKIA A  F +GE  FV
Sbjct: 79  NTAKLDPGTVISYPVFFKYSVDKRLRPRYKVLEVLKVKNLLKNKKIALAWWFTQGEREFV 138

Query: 121 EKYVVKHLDEIPNLMDIYRGNVAAETKSV 147
           +  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 139 QNNVVKHLDEIPNLMDIYRGNDASETKSV 167

[Close]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match: A0A1S4DWY9 (uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=3 SV=1)

HSP 1 Score: 225 bits (573), Expect = 1.12e-72
Identity = 113/147 (76.87%), Postives = 124/147 (84.35%), Query Frame = 0 

Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 60
           MF++AV   LS++DS W  KINV+KSLGWSE EIF AFKK P Y  CSE+KMRDVADFC 
Sbjct: 42  MFVYAVLIRLSLSDSNWTNKINVLKSLGWSEKEIFAAFKKDPNYLGCSEKKMRDVADFCF 101

Query: 61  NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEK 120
           NTA LDPGT+ISYPV FK SV+KRL+PRYKVLEVLKVKNLLK KKIA   ++GE  FVEK
Sbjct: 102 NTAKLDPGTVISYPVFFKSSVDKRLRPRYKVLEVLKVKNLLKNKKIAGVLLQGEKTFVEK 161

Query: 121 YVVKHLDEIPNLMDIYRGNVAAETKSV 147
           YVVKHLDEIPNLMDIYRGNV AETKSV
Sbjct: 162 YVVKHLDEIPNLMDIYRGNVEAETKSV 188

[Close]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.76e-72
Identity = 117/147 (79.59%), Postives = 127/147 (86.39%), Query Frame = 0 

Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCSN 61
           F++AV   LSM+DSTWKKKINVMKSLGWS+ EIFTAFK+ P Y  CSEEK+RDVADFC N
Sbjct: 227 FVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFN 286

Query: 62  TAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFVKGEGYFVEKY 121
           TA LDPGTLISYP LFK S +KRL+PRYKVLEVLKVKNLLK KKIAS  V+GE  FVEKY
Sbjct: 287 TAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKKIASVLVEGERRFVEKY 346

Query: 122 VVKHLDEIPNLMDIYRGNVAAETKSVV 148
           VVKHLDEIPNLMDIY GNV AETKSV+
Sbjct: 347 VVKHLDEIPNLMDIYVGNVEAETKSVL 373

The following BLAST results are available for this feature:
BLAST of Cucsat.G9609.T34 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G9609.T34 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031742250.13.98e-10099.32uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharact... [more]
KAE8648644.12.95e-9899.32hypothetical protein Csa_008356 [Cucumis sativus][more]
XP_031741759.12.31e-8082.99transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus][more]
KAE8648655.17.23e-8082.99hypothetical protein Csa_008541 [Cucumis sativus][more]
XP_031741755.13.63e-7883.22transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucum... [more]
BLAST of Cucsat.G9609.T34 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DW221.72e-7577.03transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumi... [more]
A0A1S3BEV92.72e-7477.03transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumi... [more]
A0A1S3CSA27.95e-7377.85uncharacterized protein LOC103504258 OS=Cucumis melo OX=3656 GN=LOC103504258 PE=... [more]
A0A1S4DWY91.12e-7276.87uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=... [more]
A0A5D3CXX81.76e-7279.59Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 35..66
e-value: 120.0
score: 11.0
coord: 67..98
e-value: 0.071
score: 22.2
coord: 1..30
e-value: 190.0
score: 9.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 9..98
e-value: 3.9E-16
score: 58.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..140
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 1..131
e-value: 3.6E-25
score: 90.6
NoneNo IPR availablePANTHERPTHR13068:SF31TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKEcoord: 1..140

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G9609Cucsat.G9609gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9609.T34.E1Cucsat.G9609.T34.E1exon
Cucsat.G9609.T34.E2Cucsat.G9609.T34.E2exon
Cucsat.G9609.T34.E3Cucsat.G9609.T34.E3exon
Cucsat.G9609.T34.E4Cucsat.G9609.T34.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9609.T34.C2Cucsat.G9609.T34.C2CDS
Cucsat.G9609.T34.C1Cucsat.G9609.T34.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G9609.T34Cucsat.G9609.T34-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006353 DNA-templated transcription, termination
molecular_function GO:0003690 double-stranded DNA binding