Cucsat.G9025.T9 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTGGTTTTAAATGCTTTTTGGTCCATTGCTCATTTCCTCCTCCATTGCATTTGCTCTGGAGTTTGAGTTTTTCTTTTTTGCTCATTTACAAAGAGAAAGAAACAGATTTTAAGTAAAGGGTCACTTCAATTTCCAGCTGAAATTTGGGATTTCTTCAGGTTTTTGTTTCTTTTCGTCATGTTTTTTTTTTTTTTTTTTGTTTATGGCTATTGGGTTTTTTCTCCTTTTTGCTTCCCCTCCCTTTTTTAGGGGTTCTTTCTTCTTTCCTTCTTTTTTCTGCTTGGTGTTTCCATTGAAACCCCTTTTTTGTGTCTTTTATCTATTTTAAAGTCGTTGTGAATTGTGGTGATAATATAAAATAATGGATTTGGTTCTTGGGGAAGAAAAGTTTCTGTTTCGGTTTCTGTATGTGTTTTTACCCAATTTAGACAGACAGCTTTTGCCCCTTTTTTTGAAAATTTTGTTTTGTTTTTCAACCTCTCTGAATCCTCTGTTTCGTGTTCTGAATTCTTCAAGATTCTGTTTCCTCTTCTCTATTTGAAAGGGTTGATATGGTTATGGTGTTTTCTAATGATTTGTTTGGTTTAGAGAGTCAATTGTGTAAATTATTTAATTAAAAGTGTCATTAAATACTACTTTATTTGGACTTTCTTCTCACTCTTTTGCTTAATTTCATGGGTTTTAATAAATGGGGACAGCAAATCTCTTTATTAATTATTTTATTTCTTTTCTTGGTCAATTGCTAACCTAGATTTTGTAGTTTTTTTTGAATAATAATTTGTGGGGATTTCTTGTTTTCTACTTTTCAAGCCTCAAAGTATGGATTAAAGCTTGGTGTTGTTGTAACAGAACAAGAATATTTTCCTAATTTGTGATTTTTAGGGTTATTTTCTTTATCTTATTTATTGTTTCATTTTGACAGAGATTCTGTGTCAAAGCAGCCATGAATTATTGCTTTCCTGATTGGAATTTTGAGGGTGACATTCCCCCAGCTAAGAAATCAATGGGGTTGGCTCTCTTTTTCTCTCCCTCTTTTTTGCATTCTCTTTCTCTATCTAGTTGTTTCAAATTTCTAAGAGAGGGGGAAAATATTGGTATACTCTTGAGCTTGGTATTTTGTGTATTTTTCTTTAAGCTTGGATGGGGATTTTGCAGACCTGAACATGATGATCTTGTGGAACTTTTATGGAGAAATGGTCAAGTGGTCTTACAAAGCCAAAAAGCTAGAAAATCAAGTTTAATTGCTAATGAAGTAAGGCAATTTCAAAAACAGAATCAACCACTTTACAGGAGTAATGTGTCTTGTGGAAATTCAAGCAATTTGATTCAAGATGATGAGACAGTCTCTTGGATACAAGATCCGCTTGATGATTCGTTCGAGAAGGAATTTTGTTCCAATTTCTTCTCCGAATTACCACCTGCTGATCCTATTGAGATTGTTAAGCAGCCTATCAAACATTTCCAAGATGACAAGCAAACAAAGATTTGGTGCCTTTGATACTGCTACTCATGTTACTTTTGGGAATTTTGTGAAGAAAAACTCGAAGCCGCCTGCATCTCTTGCAGAGTTCCCTATGAACACTATGCCTCCTCCGAGATTTCAGTTTCAAGATTCGTCACGGCAGAACAAGGATTTAGGAGATTTAGGAAAATTGGTGAATTTTTCTCAAGTTCCTGTGCCTCCCTTGAAGGGTGACCTGGGATCATCAAATGGGGGGAGAGAGTCTGGAAACTTGATACAGGGAGAGGGAAGAGATTGTTCGGGAATGACAGTTGGTTCGAGCCATTGTGGTAGCAATCAAGTTCCTAATCCAAATGACCTGGATTTGAGCCGAGTTTCAACAAGTGGTTTTGGAAATGCTGGTTTATCTGCTGGTTTCTCCAAGGAAGATAATAGAAAGATGGTTGCACAAGGTGAGAGGGACAAAACTGAGACCATGGATCCAACTGCCACTTCATCCTCAGGCGGTTCGGGAAGTAGTATGGACAGAAGTAGAACAATTGGACAATCTACTGGAGGTAACGGCAACAAAAGAAAAGGCCGAGACGGAGAAGAATCCGAGTGCCAAAGTGAGGTAAAATTATCAAGCATTCTTTTTTTCTATTGCTAGGCTCATTAGTTATACTTTTTAGACGTGAACACAACTTAACATTTTCTGTAGACTGCTGAACTCGAATCTGCTGAGGGAAACAAGACAGCTCCACGATCTGGATCTTCTCGCAGGACCCGTGCTGCTGAAGTGCATAACCTTTCAGAAAGGGTAGGATATTAAAAGTTCCCCATTTGTCAATCTTTTTCCTATACTGAATCCTATGTTAAAAGCTTGCTTGTAATGCAGAGGAGAAGAGAAAGGATAAATGAAAAGATGAAAGCACTGCAAGAACTCATTCCACACTGTAATAAGGTATTTGCATACCACATCTAGTCTTCCATTTTTTAATTCTTTATTATTTCTTGATGATTAAATTTTGCTACAACGTTATTAGCGATAATAGAAAAGTCTAACTAGAACTTTTCGGATTTATCCTTAGTAATAGTTGTTGGATCTAATCGAGAAAGAACGTGTAAAGGATTTTTTCCTTTTCTTTTTACTTGTCATAAATTTATATATGTCAACTTCAAGCTGGAACTAACAATGATTGAAACAAATTCATTCAACTTGCGTGACTTCAAAATTTTCAGTCTACCTGAATCTTGTACTCTTTAGTAATTAGTCCTTTTGTCACAGACTGACAAAGCTTCAATGCTAGATGAAGCTATTGAATATTTGAAGTCACTTCAATTACAACTACAGGTATGAGTTTAACCAAGAATTCCACAAAATCTACTGATCTTTCTACATACAATACAAGCCACAAATTTCTTTTGTAATTGCTTAATGTTCAATAGGTAATGTGGATGGGAAGTGGGATGGCGCCCATGATGTTTCCCGGCGTTCAACATTACATGTCTCGAGTGGCTATGGGCATGGGTATGGCCCAACCTTCAATGCCTTCAATTCACAACCCAATGCAATTACCTCGGGTCCCGATTGTCGATCAATCAGTTTCAGTGGCTCCAACACCAAACCAACCTATGATGTGCCAACCGCAAATGTTCAACCCGATGAATTATCAAAATCAGATGCAGAATCCCGCTTTGCAAGAGCAGTATGCTCGTCTAATGGGATTCCATCATATGCAACCTACCTCACAGGTTAGAAATCAGATTGTGTTTGGAGTTTTTCCTTTGGATGTTTTCTTGTAAAAAAAGCCTACTAACAATTCTGACTAATTCTATCTTGTTTTGTTCTTCAGCCCATAAATGTGTTCAGATTTTGTCCCTCAGCAGTCTTGCAGAGTCAACCTGCAGCAGCACCTGGCCCTGCTAGTGGTCCTACTGCTGGAGGATCTATAACCAATGATATTGTAAATGGAAATTTGGGTAAGTCTTGTGGATCTTTCTTATTGTATCATTAACAAGTGATTAATATTAATCTGACTTGGATACGACTTCTTTTATAGTAATCAATGATGTTTATATGTGTCGGTAGTAAAATAATTTAGTTATTGTCCAAATCTAACATCTTCGCAAGAGTGCCTGTCCCTTGTTTGGGGCATAAGGGGGGAGAGAGAGTAAGTGGATGAATCATGTTGAAAGTTTGAGAACCTTTTTTTGCTGATTCTACCAATCTTGGACATAATGAGTGGTTACAAGAAATAACTGAGTTCATATGATGCCTTATCTTCTCAAATAGGCACCTACCTTTTTCTCTCTCCAAAAGGGTACCAAGTCATCTAAATCTTTACCCTTCAAAAATTTTCGCATAGTTGTCGGCCAATTTGTTCCTTCCCTACTAGTGGCTCTCTTTACAAGTCGTAGTTTCGAGTGTAAATGCACGGTGGCCAAATTGAAAGACAAATACCCTATGGAATTAAAACTGCATTCCCTCTTTTTGAATCTGATACCGCAAGTGTGTCTCTCGGTCACGTAGCTGTCGTTGACAGTCTTTTTCTTTTGCTGATGTTAACAGGTTGACAAGTGAAATTATCCATGTTTATCAGTTAGCTAAGGTTCCTTCTCGGTTTATTGCGAAGCATCATTCCTCGATATGGTGGAAACCATGATTGTTGGTTCTTTGTGTATATCTGATACAGATTCTTGCCTCCTTGCCCTCCAAGTACACAGCTTATATGCTTTCCAACTTCATTACCATATTACATAATAGTAATGGAAGAAGCTTCATTAATCTGTATATTGTTGAGACAGCTAAAAACTCAAGATTCAAATCTTGCAATTCAAGGTATTTAACAAAAAAATTTTGTCAAAGAACGCTTTACGAAATAAGATCAACTAGTTTGTTTCTGTCCAGCTTAAGCTCATTTGTATGTACTATCTCTTAAACTGTCAATGAATTGAAAATAAGTTGATTTTGATATTATCCTGCTGCTGTTTAC ATGATGAGACAGTCTCTTGGATACAAGATCCGCTTGATGATTCGTTCGAGAAGGAATTTTGTTCCAATTTCTTCTCCGAATTACCACCTGCTGATCCTATTGAGATTGTTAAGCAGCCTATCAAACATTTCCAAGATGACAAGCAAACAAAGATTTGGTGCCTTTGATACTGCTACTCATGTTACTTTTGGGAATTTTGTGAAGAAAAACTCGAAGCCGCCTGCATCTCTTGCAGAGTTCCCTATGAACACTATGCCTCCTCCGAGATTTCAGTTTCAAGATTCGTCACGGCAGAACAAGGATTTAGGAGATTTAGGAAAATTGGTGAATTTTTCTCAAGTTCCTGTGCCTCCCTTGAAGGGTGACCTGGGATCATCAAATGGGGGGAGAGAGTCTGGAAACTTGATACAGGGAGAGGGAAGAGATTGTTCGGGAATGACAGTTGGTTCGAGCCATTGTGGTAGCAATCAAGTTCCTAATCCAAATGACCTGGATTTGAGCCGAGTTTCAACAAGTGGTTTTGGAAATGCTGGTTTATCTGCTGGTTTCTCCAAGGAAGATAATAGAAAGATGGTTGCACAAGGTGAGAGGGACAAAACTGAGACCATGGATCCAACTGCCACTTCATCCTCAGGCGGTTCGGGAAGTAGTATGGACAGAAGTAGAACAATTGGACAATCTACTGGAGGTAACGGCAACAAAAGAAAAGGCCGAGACGGAGAAGAATCCGAGTGCCAAAGTGAGACTGCTGAACTCGAATCTGCTGAGGGAAACAAGACAGCTCCACGATCTGGATCTTCTCGCAGGACCCGTGCTGCTGAAGTGCATAACCTTTCAGAAAGGAGGAGAAGAGAAAGGATAAATGAAAAGATGAAAGCACTGCAAGAACTCATTCCACACTGTAATAAGACTGACAAAGCTTCAATGCTAGATGAAGCTATTGAATATTTGAAGTCACTTCAATTACAACTACAGGTATGA MMRQSLGYKIRLMIRSRRNFVPISSPNYHLLILLRLLSSLSNISKMTSKQRFGAFDTATHVTFGNFVKKNSKPPASLAEFPMNTMPPPRFQFQDSSRQNKDLGDLGKLVNFSQVPVPPLKGDLGSSNGGRESGNLIQGEGRDCSGMTVGSSHCGSNQVPNPNDLDLSRVSTSGFGNAGLSAGFSKEDNRKMVAQGERDKTETMDPTATSSSGGSGSSMDRSRTIGQSTGGNGNKRKGRDGEESECQSETAELESAEGNKTAPRSGSSRRTRAAEVHNLSERRRRERINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQV Homology
BLAST of Cucsat.G9025.T9 vs. ExPASy Swiss-Prot
Match: Q10CH5 (Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL13 PE=1 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 4.3e-29 Identity = 83/129 (64.34%), Postives = 101/129 (78.29%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy Swiss-Prot
Match: Q8W2F3 (Transcription factor PIF4 OS=Arabidopsis thaliana OX=3702 GN=PIF4 PE=1 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 5.6e-29 Identity = 105/218 (48.17%), Postives = 127/218 (58.26%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy Swiss-Prot
Match: Q84LH8 (Transcription factor PIF5 OS=Arabidopsis thaliana OX=3702 GN=PIF5 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-25 Identity = 95/190 (50.00%), Postives = 117/190 (61.58%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy Swiss-Prot
Match: O80536 (Transcription factor PIF3 OS=Arabidopsis thaliana OX=3702 GN=PIF3 PE=1 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.3e-22 Identity = 79/152 (51.97%), Postives = 105/152 (69.08%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy Swiss-Prot
Match: Q8GZM7 (Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 6.2e-20 Identity = 89/234 (38.03%), Postives = 129/234 (55.13%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. NCBI nr
Match: XP_011653988.1 (transcription factor PIF5 [Cucumis sativus] >XP_011653989.1 transcription factor PIF5 [Cucumis sativus] >KGN54953.1 hypothetical protein Csa_012072 [Cucumis sativus]) HSP 1 Score: 526 bits (1356), Expect = 5.49e-183 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. NCBI nr
Match: XP_008464685.1 (PREDICTED: transcription factor PIF4-like [Cucumis melo] >XP_008464686.1 PREDICTED: transcription factor PIF4-like [Cucumis melo] >XP_008464687.1 PREDICTED: transcription factor PIF4-like [Cucumis melo]) HSP 1 Score: 505 bits (1301), Expect = 1.22e-174 Identity = 265/276 (96.01%), Postives = 270/276 (97.83%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. NCBI nr
Match: KAA0032908.1 (transcription factor PIF4-like [Cucumis melo var. makuwa] >TYK28090.1 transcription factor PIF4-like [Cucumis melo var. makuwa]) HSP 1 Score: 505 bits (1301), Expect = 1.18e-173 Identity = 265/276 (96.01%), Postives = 270/276 (97.83%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. NCBI nr
Match: XP_038897580.1 (transcription factor PIF4-like isoform X2 [Benincasa hispida] >XP_038897581.1 transcription factor PIF4-like isoform X2 [Benincasa hispida]) HSP 1 Score: 486 bits (1250), Expect = 6.61e-167 Identity = 262/276 (94.93%), Postives = 264/276 (95.65%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. NCBI nr
Match: XP_038897579.1 (transcription factor PIF4-like isoform X1 [Benincasa hispida]) HSP 1 Score: 486 bits (1250), Expect = 1.28e-166 Identity = 262/276 (94.93%), Postives = 264/276 (95.65%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy TrEMBL
Match: A0A0A0KZR2 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G615240 PE=4 SV=1) HSP 1 Score: 526 bits (1356), Expect = 2.66e-183 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy TrEMBL
Match: A0A1S3CMJ5 (transcription factor PIF4-like OS=Cucumis melo OX=3656 GN=LOC103502508 PE=4 SV=1) HSP 1 Score: 505 bits (1301), Expect = 5.90e-175 Identity = 265/276 (96.01%), Postives = 270/276 (97.83%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy TrEMBL
Match: A0A5D3DXW5 (Transcription factor PIF4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003560 PE=4 SV=1) HSP 1 Score: 505 bits (1301), Expect = 5.73e-174 Identity = 265/276 (96.01%), Postives = 270/276 (97.83%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy TrEMBL
Match: A0A6J1CKT0 (transcription factor PIF4-like OS=Momordica charantia OX=3673 GN=LOC111012049 PE=4 SV=1) HSP 1 Score: 451 bits (1161), Expect = 1.11e-153 Identity = 244/277 (88.09%), Postives = 254/277 (91.70%), Query Frame = 0
BLAST of Cucsat.G9025.T9 vs. ExPASy TrEMBL
Match: A0A6J1FPI6 (transcription factor PIF4-like OS=Cucurbita moschata OX=3662 GN=LOC111445806 PE=4 SV=1) HSP 1 Score: 422 bits (1085), Expect = 1.64e-142 Identity = 233/276 (84.42%), Postives = 241/276 (87.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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