Cucsat.G8436.T1 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCTAATTACCATGTCCCATCTTTGAAACAATAAGATACAAAACAAGAGAGTATATATATGTGCCTTACACCACTCTCATCTTCATCCATCTCTCCAATCTCTTAATACTCCAAATTAACCTTTTCAAATATGGTTTGCATAGAGACAGAAGCAAGAGAGAGCTTGCAAATACAGGAGAGTTATGGTCATTGTCTTACTTATATTTTGCCAAAAACTCTAAATGTCACGGTGCATTGGCCTACCTATGCTAAGCTCTATCAACAACTTATTGCTGGAATCACCCTAAACAAGGGAACTAAGGCAAGTCTAACATTCTTTTTAATTTGTTTACACTATCATTTATAAAGTAGTTAAAAGATATATTTGAGATTGGTTTTGAAATCACTAAAATCCCTCGTAATAGCTTGGATCGATAACTGTGTTCAAAGAGCTGAGTATGATTAGTTTGTTTGCAGCTTTATTGGTTTGACAAAAAGGGAAAGGGTAATAGGTATGTCCTACTTCCAAAATCCCTCACAATAAGTTGGATCGATGATTGTCAATACTGGAAATGGATTCCCGGGGAGATCTATGGGTATGTTTTTTTTTTTTTTTTTTACTATCATTAAATATCGTTCTAGTTTCTATACTTTAAAATATCAATTTTTGAATGTGACAAAATATCTCGATTTACACATATACATATTTACAGTGTTTACGTCAATTTAATTTGTTATAAATTTATAAGTTAGTTTACTTAGTTTGTTATATTTGAAAGCAGTCTATAGTTCTTCCCCTTTCAATAAATTTAAGTTTTAGTCCATAGAACTTGCTTAGGGTTGATTTTATCTAAGTTTATGTATAAACAACTTTACCATAAATTTAGAAAATACTTACTCACGTCAGCGACTAAATTTAAGATTTATTATGGAAAGGTATGGATTAAAATTAAACAAAATTTAAATTAGAAGGACAAAACTGGAATTTTAACCTTAAATATATCTCATTCTGTCCTTCTATTTGTTTTCTTTTTATTTTCTTAACTTACTATTTTGTTTTTTTTTTTTTTCTTGTGTGTTGAAAAACAAAATCTTGAACAATGGAAGGTATATACTGACATAAAAAAAAATGAAAAAAATAAAACATAAAAGATTAGGTTTAAATTTGAATGAACTTTAATTTTTATTGTTTATTTAGTAATTAAAATTAAAAAGGTTGATTGGATGTAATTTTGAGGAATGGTTTTATAGAGAACAAATAGATTAAATTACTGACATTGGAATAGGAATGAGAAAAAGTTAGTTTTTATGATTTAATAAATGAAAATTTTCAAAAACACTAAATTTTACAAAATATTTATAACCTATAGCAAATTCTATTATTGATAGTCACTGATATACTATAGTGATAGAAGATTAGAATTCAAAATTTTGCTATAACTTGTAGATATTTTAATTTATTTTGCTATTTTTAAAAATGTCCCTTTAATAAAATCACTTTCTAAAATTTCATAAGACTAAATTGAACTTAACCTTTTACTGAAAGACCAAATTTACGATTTTAAAAAAATGTCGTGAAAAGAAAATTTTCGTTCTACAAACAATTAGATGGAATGCATAGAAATATACTAAGTTGTTTATTTGTTGATGATGGTGTAAAAAAAAAAAAAAATGGCAGTAAGAAAATTGACGTGGCAGAGCTTATAAAAAGTATGTTGGTTGGATATAAGTGGAAAGTTGAAGCAATACGCACTATCATCTGGAGTTCTATATGAAGTAATATGTCATGTTGGCGTTACACCTTGTGCCTCTGGATGGCAAGAACCTGTTACCTTTGCAATCACCCTCCCAGATGGAAAAAAAATTGAGATCAAAGAAAGCATACAATGTAAGCCACGAGATGTTTGGATTACGATCAAGATTGGGGAATTCAAGGTCGACAAACATGATTGTAACAGTGATAAGGAGTACGAGTTTAGAGTGTATAGTCACAGCAGTCAATGGAAGACGGGGTTGAAATTTAAAGGTTTCGAAATTCGACCAAAACAATCGAGTTGCGGATGCTAAAAATATAAATCACTAAATCTCTCTCACTCCCACTCCCACTACCCTACTTGTAGTTTGGTTTAAATAAATGAGAGAGGTATACTACACTCTACTTTGTTTTCTAATATAAACAACAATATCACTATGTAATACAGTAATAGTGTTCAATAAAAAAAAAATTAATAAAGATATATATATATATAATATAGAAAACTACCTTCTACTTAGTATATTTATATATATATATATATATA ATGGTTTGCATAGAGACAGAAGCAAGAGAGAGCTTGCAAATACAGGAGAGTTATGGTCATTGTCTTACTTATATTTTGCCAAAAACTCTAAATGTCACGGTGCATTGGCCTACCTATGCTAAGCTCTATCAACAACTTATTGCTGGAATCACCCTAAACAAGGGAACTAAGCTTTATTGGTTTGACAAAAAGGGAAAGGGTAATAGGTATGTCCTACTTCCAAAATCCCTCACAATAAGTTGGATCGATGATTGTCAATACTGGAAATGGATTCCCGGGGAGATCTATGGTAAGAAAATTGACGTGGCAGAGCTTATAAAAAGTATGTTGGTTGGATATAAGTGGAAAGTTGAAGCAATACGCACTATCATCTGGAGTTCTATATGA MVCIETEARESLQIQESYGHCLTYILPKTLNVTVHWPTYAKLYQQLIAGITLNKGTKLYWFDKKGKGNRYVLLPKSLTISWIDDCQYWKWIPGEIYGKKIDVAELIKSMLVGYKWKVEAIRTIIWSSI Homology
BLAST of Cucsat.G8436.T1 vs. ExPASy Swiss-Prot
Match: C0HJV2 (Lectin OS=Luffa acutangula OX=56866 PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 8.1e-16 Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy Swiss-Prot
Match: P0DSP5 (Lectin OS=Coccinia grandis OX=387127 PE=1 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 3.8e-05 Identity = 18/68 (26.47%), Postives = 38/68 (55.88%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. NCBI nr
Match: XP_004135559.1 (lectin [Cucumis sativus] >KGN65960.1 hypothetical protein Csa_023237 [Cucumis sativus]) HSP 1 Score: 228 bits (580), Expect = 2.89e-73 Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. NCBI nr
Match: AAM89256.1 (26 kDa phloem protein [Cucumis sativus]) HSP 1 Score: 227 bits (578), Expect = 5.81e-73 Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. NCBI nr
Match: CDK12646.1 (phloem lectin [Cucumis sativus]) HSP 1 Score: 225 bits (573), Expect = 3.35e-72 Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. NCBI nr
Match: AAM82557.1 (26 kDa phloem lectin, partial [Cucumis sativus]) HSP 1 Score: 208 bits (530), Expect = 7.85e-66 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. NCBI nr
Match: NP_001284457.1 (protein PHLOEM PROTEIN 2-LIKE A1-like [Cucumis melo] >AAM74921.1 26 kDa phloem lectin [Cucumis melo]) HSP 1 Score: 176 bits (446), Expect = 6.65e-53 Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy TrEMBL
Match: A0A0A0LVN2 (Phloem protein OS=Cucumis sativus OX=3659 GN=Csa_1G542510 PE=4 SV=1) HSP 1 Score: 228 bits (580), Expect = 1.40e-73 Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy TrEMBL
Match: Q8LK13 (26 kDa phloem protein OS=Cucumis sativus OX=3659 GN=PP2 PE=2 SV=1) HSP 1 Score: 227 bits (578), Expect = 2.81e-73 Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy TrEMBL
Match: W0ZFB6 (Phloem lectin OS=Cucumis sativus OX=3659 GN=pp2 PE=2 SV=1) HSP 1 Score: 225 bits (573), Expect = 1.62e-72 Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy TrEMBL
Match: Q8LK68 (26 kDa phloem lectin (Fragment) OS=Cucumis sativus OX=3659 GN=Lec26 PE=2 SV=1) HSP 1 Score: 208 bits (530), Expect = 3.80e-66 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Cucsat.G8436.T1 vs. ExPASy TrEMBL
Match: Q8LK97 (26 kDa phloem lectin OS=Cucumis melo OX=3656 GN=Lec26 PE=2 SV=1) HSP 1 Score: 176 bits (446), Expect = 3.22e-53 Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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