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Cucsat.G7980.T6 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATATTGAAACACATTCTATTGGTCCAACTAAGCTTTCTCATCCACGAAACTTCCATGAGTTTCCTAATTCCCCAAAATCATCTCTCTATAAATACCCTCTTCTTCTTCCCTTTCAACTCTCCCCTTTCAATTTCCCTCCCTCATCGTCGAAAAATCTATTACCGACGCCTCACCTGAGCAGCCAATCCCAATTTCTCCCCGGAACCAACATTCATCTCTCTTCTGCTCCCCAATTCCCCGCTTGCTCAAGCTTTTTTAGGGTTTAGAAGAGCCCAGGAGGAGGAGGAGGAGGAGGAGGAGCTGGTTGTGAACAATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTTGATGTTTTGGATGCTGCTGAGGAAGATTGGAATTTGTTGGATTTCTCTTTATTGAGCTGCATCTTGATTTCCTTTCCTAACCCAGATAGGCTTAAACAGATCGAATTGGGACTGTGGAGGGGTGGGAATTGGGAAATCGTAGTAAATTAAGGTTTTCTTGTATTCGTGGGGGAACTTCTGATCATGGATACAAATTTTGTGAACTGATTGTTGGCTCGGTGGTTGCTTAGGATTCGGGTCCTGCAGCTGGGGCTATTGGAAAAACTTTAGTCCTTTAAAGAAACGTTTTTTTTATGCTTGGTAGAAAAATTGATTAAAATCTTTGGATTAGTGATCTTATCTTATTTGTGGAATTGACTAATCGGAATTTAGAAACTTGGAGTTGAGCTAAGAAGTCATGTAAATGAAAAGCCAATCTGGGTAGATCTTTTGGAGGAGAATATCGACTTGAAACATATACCCATGCTGTAGATGTGCACTTATGTGGTTGAGCTGAATTTAATGAAATGGTTCTTCAGGTCTGGAATGCCCAGGAACAAAACGTTTTGAGTTGAATTTTCTTGTAGCTTTTGCTTTATTTCTTCAATATTCTGGCAAGCAACTTTGTTGGTGGAATGGGAATGGTATATCTTAAGTTCACACAATTAGGTTGATTTACCTTGTCACTTTGGAGTTCCGAATTTTTTTTATTCATACTGGGGGAAGCCACTTCTCTAATTGGAATTAAGTAGTGAATAAACTTTTCTGTTATCGTCCTTGCCACTGGTCATGGATCGTTCTTTGGGGTTTTCATATTTTAGTTCATTTTATGGTCTTCTTGTAATGTAATTATAAATTTTGGGCTGCTTAGTATAAGTACCCCAACTTTGAGTTATGATAAGATGAAACTGATTTATAATGTTTAATAAATATATGAGTTTGCCACATTTAGAAAGGACTAATACAGCTAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGACCCATTATGACATAATTCCACGAGTTTCCATTTCATGTATTTTCTCAAAGCATTCAGGTTAGTTGTCAGTATAGAATGATCATGCAGTATTCTCAAGGTTTGAGATAATGTATGTTTCATAGTTTTTGTTAAACATTTATCTGGAAGTGATGCACAATGAATGAATGACCAAAGGAATCGTCAGATATATACGGTTCAAGTTCACATACCCACACACACACATATAGATAAGGAACAACACTCACTATGAAAAAGGAGGTTATAAAGGATGGGAGATGTGTTTCCCTGCCTAGCTATGTGGATTACAAAATGCTTTTCAGTTGGTTTAAATTTGAAGAGAAAGTAAAGAAAAACATTATTAAAGATTAAACACCAGCATAAAGTGTGAGCCCTGAACGTGGGATTGAAGACCATGCGAATTGTGTGATGTAAGCCTAGAATAGAAAATAACCAAAATTTTCAGAGAGACAGAAAATTCTATAATTTCTAGATTATGCATGCCTCAATAGTTGAGTCACTTCACGCACTGGCTTATTGGTATTAGCCTCAGGACTAACAAGTGTGTTATGGCTTCATTTTGTTGTTTGTGGTCACAAAACACATCTTGAAGGTAGAATGCTGTTGATCAAGGGTTGAAAGCAGCAAAAGGGAGAGGAATTTATGGAAAATTAACAACACAAATATTGAGGAGACTGAATAAGGAGGTTGAAACTTCAAAGCCACAACCATTTAGCTAAAAGGAGGGCTTTGTTACTCATCCTAAAGTTTCCAATTTCCAAACCTCCGAAAGATACTGGTCTCTCAATAACCTTGCACCTAAACAAACCTTTTCCTCTTCTTTCACAAATCCCTTCCTAGAGGAAGTCACACATCAACCTCTCCAAACACTTCATACCTCACACAGAGCCCTAAAAAGAGAGAAGAATACATGGACATTAAGTTCTGCCTACGGGAAAAAATATTCTGTATACTTTCATTAATTCCCGTCTTTATTCATCTACAACAGACTGTTGATTTATCACAAGTACAGTGTGTTTTTAAAGAAACTTGGTAGAATTTTTAAAAACACATTGTAGCTGTTGTGATAAATCAGTGTATGTTATAGATTGAGTAAAGACAGGACTTAATTGTGTTTAAACACGACTAATGAATTTATACCACGTAGATATTTTAATAAAATATTTAGTTTATATAAGAAAAAGTCTTTATGAGGACAAATGCGTAAGGAAGTTAAGGAAGAGGCTTGTGGCATCTGGAAGAATGAATATTGGTGATTGAGTGAGGAAGTTGAGCATTATCAGAAGGAAACGTAGGAGACAGTAAATTACACTGGTTAATGGGTGAAAGAAAAAGAAATTGTCTATAATATTGGAGAATTCTCTAGAAGCAGCCAATTAGATAATACTTGTAGCCAATTAGATAATACCTGTATAAAGAATTTTCTGTTATTCGTTCTACCTTTTGGGTAGATGAGACACTGAGTTTAACATCATCAACAGATTAATAATGAGAGTGTTAGAATTTTTTGCCTGGGGGTGGAGAGTTTGACTGCTTCTTCTTGGGTGTCTACTAAATTTTAACTTTTGTTATCTGTGGCAATTGTACTTTTGTCTTTCCTATAAAGATGTATTTGTAGAAGGGCTTTTTTTTTCGTTTCTTTTTTTCCATGGTGTTTTTTGCATTCTCTCTGCGAATAAATAGTTTTTCATTAAAAAATAGATTTGCTTCCTATCAAAAGAGGTGATTCAATGTTTTACATTTGATTTTGATTGACTAAGAGGTCATGGGTTTAATCCATGGTTAGCCACCAATTTTCTGAGTTTCTTTGACATCCAAATGTCGTAGAGTCAGGTAGGTGACGTGAGATTAGTTGGGATGCGAGTATATCTAGGTCGAACACTCACACACAAAAAAATAATAATTACATCCGATCTGTTATTGGATCCAAATGCAATATTTAAGAAAAAAATATTCAAGTTTGGAATTATGTTTATTCAGTTTGTTAAATGTTTATGAATTTATTCTTCGCAGTTGCTACATGCTGTGGTACAGTTCTAATGTGATTGTAGTTGCAACCATTGATAGGATAACTTGTGAAGATTACAATCTGAAGTCTTTGAATTTCTGGCCAAGTTACTTTATAATGAAATTGTTCCTCCAAACTGTAAAGTGCCGTAGACTAATTATTCAAACAAGGAAAATTCCTCTGGTCCAGAATAGGTTTACATGAAATTATATACCGGTATTATATGATTTGGATATCAGCTTAGTTTTAGATTGCTTTTCTCTATATCATTCATTTCTCTAGCAAGTGATCTTTGAAGATGTTTAATTTTCTTAAACGATTTTCTCATTTATTAATTACATACAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAACCCCGCACGGTCAAGGGTATTGCTCCTTTGATATCCGGAGCATTTGTGGTTTAATTTCTATACTTAACTAACCATGCTGATTTTGATTAGAAATTTGCTCTGTTGCCAATGGGGCAACAAAGAAGGAGATTGGGCGAGCAAAAGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTAGAGATGGGGACAATACACGCTGGAGACTTTATGGTGAGGCTTTTGGTGAAAAAAATTCACTTCGAGTTTTTGACCTTGATCATGGACAATATGTCGTTTGTTTCTTCTTATGTCATTTTTTTCTTAAATGAATATAGAGGCGTTTTTGTTCAAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTTGATATTCGGTAACGTTTGTTTTCTTTGGTTGTTGTGAGATTATGAATTTATTGTTTTAGCTTTCTTCTTTATGGTCATTTGTTTGGTTGGTTAGTTAAGTATTCTCTGAACTCTGAGAAGTTACTTCTGTGTTTATGTTTGACAAAATTCACCCTGTGAACAACTACAGATCCCTCTTCTGGTCTGGCAGTAGTAGCCAAAGTTTTTTCCCATTCCAAAACAAAAAAAAAAAAAAAAAAAGAGGGTAAAAGGGAAAAAAATATTTATAATTGGTTTCCATGAAGTCAGTCTCTTATCGACTATGGGCAGACCTAAGGTTGAATGTTACAGTTAAATAGGTGCTTGCTTTGCTCACTGCCTCATGTTGATCTCTTTGATCTCTAACTTAGAATTGAAATATTTTTATCTCTGAGCAGAGCTTTAGAATATACTTTCATATTTTCATCATTCACGATTATTAGCTTTGCCTATTCTCGGAATATTGAACTTGATATGCTTATTAGAAAATGTAGAAGTTTAAGTATGGTTTTTAAGCTTAGGCACCCATCCCTATGTAGAAGTTCTTAAGTTAAGGCTCCCATTTCAAATCAAAATCCAAACTTGATATACTTCCTTCTCTTGAGGCTGAGGGCTCCACCCCATAGCATGGTTTCACAGAGAAAGAAGCCTAAAAACAACTACAAGTGGTGCAAGTGCAGGGAAAGAACCAAAAACCGAGCAAACTGCTAGCTGCTGGTGGTTTGGTTTGTAACCAGTTTAGGTTGGTCGTTTCGGTTTGTGTAGAGAAAACTGGTCAAATTTGTTTGGTTCCAAGTTTTGCATGAATCAGAACGAATAAACTTGAAACTGACCGATAATATGTATTGTGATAATCATAGTACACTCTGAAAGGGCACATCAATGCAGATGGTTGCAAGCCCCCTTAGGAACTGCGTAGGGTACCACCAGTTTTTTGCCCATTAGTTAATCACCTACAGCGGGCTGCTCTGAAAAAATTCCAAATCTTTATTTGACTGGTCCACAGTTTTGCAGGCTCACCTCCAGCCAAGCCCATGGAATGATGAACAAGTCAGAAAATTCAATAAATGGTGAACCGTCTGTTAGGTACCTAGATTTAGATAGAGTTAAGGGTAGTTAGTTACATAAGGCAATTCGATGGTTATAAATAGGAAGTTGGGGAGGGAAGAAAGACATGGAGAATTTGGTGAAGTTAATGGGCTGCAACATTCCTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTCTTTTACTTGTTTGTTCTTTAGTATTGTAATTTTCTGTTTGAGATATCAGTAAAATAGAAACACTATATCAGTGTTCTATTACTGTCAAACCAAACTGATTGAACCGTCAATTTACCGGTTGAGCGGTTAGGTTGGTTTAATGTGTTTGTTTGGTTCTGCCTTAACATTTCTTTGATATTCTAATCGGTTTTACTTGAGCACCCAAACTGAGCTGAACCAACTAGAATACACCACACCCCCAACAACTTCTGCAAGTCTTCAATTTTACCCCTTCAATTTTACCCTTTTCTTGGGTGGGGTTATGAATTTTTGGCATTTGAGGGTCTAACTGTGATCCTTCCGAGGCTTACTATTCAGTATATTTCCAAATTGTAGAATATACTATTGGTGCTAAATGTTTTGCTAGGACTGGAATTTATTTTTGTTGACTTCTTGCTTAAGAGTATTTTCTTTCCTCTTTCCAGGAGAAGCCCAATTTCCATTGCAGCAGCAGTTATTTATATTATTACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGGTAAATATTAACTGCCAAAATGTTTGATACTGATTCTACCGATTGTTTTTAGAATCTTTGGTTTTCCACTCGAAACAAAATTTGACCCCTATATTCCTTAGCATAGTTGTCATCAGCCTTGATATGAAATTTGATAGAATTTTATGCATTAAATGTGTGGCTCTGATTTGAGTGCAGATATATCGGTAGCTACTGGTGTTGCGGAAGGAACAATCAGAAATTCATATAAAGATCTCTATCCACACGTGTCGAAGATATTACCGGGTTGGTATGCTAAAGAGGAGGATCTTAAGAACCTCTGCAGTCCTTAAAATGTAGAGCAAAGCGACAACGACGTATGACGGGAATTTAATCAAAATTGAAGTTACTCTTTTTCTTTAGCCTTCTTGTACTTAAAAACTCTTTGAGATTTGCTAGAAAGAAAATCTCCACCTTCTGCTTCTCCTTTTTCTAAATAGATTTATTGCCATTATGAAATTCTAAATGACCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACTTGCCCCATAGTTTTCACCTCATTCACAATGAAAAGTTGTCCAAAATTTTGTGATGCTCTCATGACTTTATCAATATCAACATTTAGCATTTGCCTCAAGTTTACACCCATTTTTAGCGGTTCTTATGGCTCCCCAAGGGTTTAAAGATTGGTTGGTATTTCGACTTTG ATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGA MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKVCSF Homology
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q9SS44 (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 1.3e-64 Identity = 118/126 (93.65%), Postives = 125/126 (99.21%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: P48513 (Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.0e-61 Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q8W0W3 (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIB PE=1 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60 Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: P48512 (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 1.6e-56 Identity = 105/126 (83.33%), Postives = 118/126 (93.65%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q9LIA6 (Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 PE=2 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.8e-24 Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: XP_004150610.1 (transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTED: transcription initiation factor IIB-2 [Cucumis melo] >KAA0043603.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa] >KGN54643.1 hypothetical protein Csa_012330 [Cucumis sativus] >TYK29758.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa]) HSP 1 Score: 257 bits (657), Expect = 1.02e-83 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: KAG7033507.1 (Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 257 bits (656), Expect = 2.45e-83 Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: KCW90140.1 (hypothetical protein EUGRSUZ_A02331 [Eucalyptus grandis]) HSP 1 Score: 253 bits (646), Expect = 2.95e-83 Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: XP_022152227.1 (transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 transcription initiation factor IIB-2 [Cucurbita moschata] >XP_022967855.1 transcription initiation factor IIB-2 [Cucurbita maxima] >XP_023544538.1 transcription initiation factor IIB-2 [Cucurbita pepo subsp. pepo] >KAG6603201.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 256 bits (653), Expect = 4.11e-83 Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: VVA30928.1 (PREDICTED: mRNAion [Prunus dulcis]) HSP 1 Score: 253 bits (645), Expect = 5.27e-83 Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A803R147 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 254 bits (648), Expect = 1.62e-84 Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A5D3E1U7 (Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00120 PE=3 SV=1) HSP 1 Score: 257 bits (657), Expect = 4.92e-84 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A0A0KYQ5 (TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 PE=3 SV=1) HSP 1 Score: 257 bits (657), Expect = 4.92e-84 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A1S3C1T7 (transcription initiation factor IIB-2 OS=Cucumis melo OX=3656 GN=LOC103495880 PE=3 SV=1) HSP 1 Score: 257 bits (657), Expect = 4.92e-84 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A059DIR8 (TFIIB-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02331 PE=3 SV=1) HSP 1 Score: 253 bits (646), Expect = 1.43e-83 Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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