Cucsat.G7980 (gene) Cucumber (B10) v3

Overview
NameCucsat.G7980
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTranscription initiation factor IIB
Locationctg1556: 1476089 .. 1483092 (-)
RNA-Seq ExpressionCucsat.G7980
SyntenyCucsat.G7980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTGAAACACATTCTATTGGTCCAACTAAGCTTTCTCATCCACGAAACTTCCATGAGTTTCCTAATTCCCCAAAATCATCTCTCTATAAATACCCTCTTCTTCTTCCCTTTCAACTCTCCCCTTTCAATTTCCCTCCCTCATCGTCGAAAAATCTATTACCGACGCCTCACCTGAGCAGCCAATCCCAATTTCTCCCCGGAACCAACATTCATCTCTCTTCTGCTCCCCAATTCCCCGCTTGCTCAAGCTTTTTTAGGGTTTAGAAGAGCCCAGGAGGAGGAGGAGGAGGAGGAGGAGCTGGTTGTGAACAATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTTGATGTTTTGGATGCTGCTGAGGAAGATTGGAATTTGTTGGATTTCTCTTTATTGAGCTGCATCTTGATTTCCTTTCCTAACCCAGATAGGCTTAAACAGATCGAATTGGGACTGTGGAGGGGTGGGAATTGGGAAATCGTAGTAAATTAAGGTTTTCTTGTATTCGTGGGGGAACTTCTGATCATGGATACAAATTTTGTGAACTGATTGTTGGCTCGGTGGTTGCTTAGGATTCGGGTCCTGCAGCTGGGGCTATTGGAAAAACTTTAGTCCTTTAAAGAAACGTTTTTTTTATGCTTGGTAGAAAAATTGATTAAAATCTTTGGATTAGTGATCTTATCTTATTTGTGGAATTGACTAATCGGAATTTAGAAACTTGGAGTTGAGCTAAGAAGTCATGTAAATGAAAAGCCAATCTGGGTAGATCTTTTGGAGGAGAATATCGACTTGAAACATATACCCATGCTGTAGATGTGCACTTATGTGGTTGAGCTGAATTTAATGAAATGGTTCTTCAGGTCTGGAATGCCCAGGAACAAAACGTTTTGAGTTGAATTTTCTTGTAGCTTTTGCTTTATTTCTTCAATATTCTGGCAAGCAACTTTGTTGGTGGAATGGGAATGGTATATCTTAAGTTCACACAATTAGGTTGATTTACCTTGTCACTTTGGAGTTCCGAATTTTTTTTATTCATACTGGGGGAAGCCACTTCTCTAATTGGAATTAAGTAGTGAATAAACTTTTCTGTTATCGTCCTTGCCACTGGTCATGGATCGTTCTTTGGGGTTTTCATATTTTAGTTCATTTTATGGTCTTCTTGTAATGTAATTATAAATTTTGGGCTGCTTAGTATAAGTACCCCAACTTTGAGTTATGATAAGATGAAACTGATTTATAATGTTTAATAAATATATGAGTTTGCCACATTTAGAAAGGACTAATACAGCTAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGACCCATTATGACATAATTCCACGAGTTTCCATTTCATGTATTTTCTCAAAGCATTCAGGTTAGTTGTCAGTATAGAATGATCATGCAGTATTCTCAAGGTTTGAGATAATGTATGTTTCATAGTTTTTGTTAAACATTTATCTGGAAGTGATGCACAATGAATGAATGACCAAAGGAATCGTCAGATATATACGGTTCAAGTTCACATACCCACACACACACATATAGATAAGGAACAACACTCACTATGAAAAAGGAGGTTATAAAGGATGGGAGATGTGTTTCCCTGCCTAGCTATGTGGATTACAAAATGCTTTTCAGTTGGTTTAAATTTGAAGAGAAAGTAAAGAAAAACATTATTAAAGATTAAACACCAGCATAAAGTGTGAGCCCTGAACGTGGGATTGAAGACCATGCGAATTGTGTGATGTAAGCCTAGAATAGAAAATAACCAAAATTTTCAGAGAGACAGAAAATTCTATAATTTCTAGATTATGCATGCCTCAATAGTTGAGTCACTTCACGCACTGGCTTATTGGTATTAGCCTCAGGACTAACAAGTGTGTTATGGCTTCATTTTGTTGTTTGTGGTCACAAAACACATCTTGAAGGTAGAATGCTGTTGATCAAGGGTTGAAAGCAGCAAAAGGGAGAGGAATTTATGGAAAATTAACAACACAAATATTGAGGAGACTGAATAAGGAGGTTGAAACTTCAAAGCCACAACCATTTAGCTAAAAGGAGGGCTTTGTTACTCATCCTAAAGTTTCCAATTTCCAAACCTCCGAAAGATACTGGTCTCTCAATAACCTTGCACCTAAACAAACCTTTTCCTCTTCTTTCACAAATCCCTTCCTAGAGGAAGTCACACATCAACCTCTCCAAACACTTCATACCTCACACAGAGCCCTAAAAAGAGAGAAGAATACATGGACATTAAGTTCTGCCTACGGGAAAAAATATTCTGTATACTTTCATTAATTCCCGTCTTTATTCATCTACAACAGACTGTTGATTTATCACAAGTACAGTGTGTTTTTAAAGAAACTTGGTAGAATTTTTAAAAACACATTGTAGCTGTTGTGATAAATCAGTGTATGTTATAGATTGAGTAAAGACAGGACTTAATTGTGTTTAAACACGACTAATGAATTTATACCACGTAGATATTTTAATAAAATATTTAGTTTATATAAGAAAAAGTCTTTATGAGGACAAATGCGTAAGGAAGTTAAGGAAGAGGCTTGTGGCATCTGGAAGAATGAATATTGGTGATTGAGTGAGGAAGTTGAGCATTATCAGAAGGAAACGTAGGAGACAGTAAATTACACTGGTTAATGGGTGAAAGAAAAAGAAATTGTCTATAATATTGGAGAATTCTCTAGAAGCAGCCAATTAGATAATACTTGTAGCCAATTAGATAATACCTGTATAAAGAATTTTCTGTTATTCGTTCTACCTTTTGGGTAGATGAGACACTGAGTTTAACATCATCAACAGATTAATAATGAGAGTGTTAGAATTTTTTGCCTGGGGGTGGAGAGTTTGACTGCTTCTTCTTGGGTGTCTACTAAATTTTAACTTTTGTTATCTGTGGCAATTGTACTTTTGTCTTTCCTATAAAGATGTATTTGTAGAAGGGCTTTTTTTTTCGTTTCTTTTTTTCCATGGTGTTTTTTGCATTCTCTCTGCGAATAAATAGTTTTTCATTAAAAAATAGATTTGCTTCCTATCAAAAGAGGTGATTCAATGTTTTACATTTGATTTTGATTGACTAAGAGGTCATGGGTTTAATCCATGGTTAGCCACCAATTTTCTGAGTTTCTTTGACATCCAAATGTCGTAGAGTCAGGTAGGTGACGTGAGATTAGTTGGGATGCGAGTATATCTAGGTCGAACACTCACACACAAAAAAATAATAATTACATCCGATCTGTTATTGGATCCAAATGCAATATTTAAGAAAAAAATATTCAAGTTTGGAATTATGTTTATTCAGTTTGTTAAATGTTTATGAATTTATTCTTCGCAGTTGCTACATGCTGTGGTACAGTTCTAATGTGATTGTAGTTGCAACCATTGATAGGATAACTTGTGAAGATTACAATCTGAAGTCTTTGAATTTCTGGCCAAGTTACTTTATAATGAAATTGTTCCTCCAAACTGTAAAGTGCCGTAGACTAATTATTCAAACAAGGAAAATTCCTCTGGTCCAGAATAGGTTTACATGAAATTATATACCGGTATTATATGATTTGGATATCAGCTTAGTTTTAGATTGCTTTTCTCTATATCATTCATTTCTCTAGCAAGTGATCTTTGAAGATGTTTAATTTTCTTAAACGATTTTCTCATTTATTAATTACATACAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAACCCCGCACGGTCAAGGGTATTGCTCCTTTGATATCCGGAGCATTTGTGGTTTAATTTCTATACTTAACTAACCATGCTGATTTTGATTAGAAATTTGCTCTGTTGCCAATGGGGCAACAAAGAAGGAGATTGGGCGAGCAAAAGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTAGAGATGGGGACAATACACGCTGGAGACTTTATGGTGAGGCTTTTGGTGAAAAAAATTCACTTCGAGTTTTTGACCTTGATCATGGACAATATGTCGTTTGTTTCTTCTTATGTCATTTTTTTCTTAAATGAATATAGAGGCGTTTTTGTTCAAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTTGATATTCGGTAACGTTTGTTTTCTTTGGTTGTTGTGAGATTATGAATTTATTGTTTTAGCTTTCTTCTTTATGGTCATTTGTTTGGTTGGTTAGTTAAGTATTCTCTGAACTCTGAGAAGTTACTTCTGTGTTTATGTTTGACAAAATTCACCCTGTGAACAACTACAGATCCCTCTTCTGGTCTGGCAGTAGTAGCCAAAGTTTTTTCCCATTCCAAAACAAAAAAAAAAAAAAAAAAAGAGGGTAAAAGGGAAAAAAATATTTATAATTGGTTTCCATGAAGTCAGTCTCTTATCGACTATGGGCAGACCTAAGGTTGAATGTTACAGTTAAATAGGTGCTTGCTTTGCTCACTGCCTCATGTTGATCTCTTTGATCTCTAACTTAGAATTGAAATATTTTTATCTCTGAGCAGAGCTTTAGAATATACTTTCATATTTTCATCATTCACGATTATTAGCTTTGCCTATTCTCGGAATATTGAACTTGATATGCTTATTAGAAAATGTAGAAGTTTAAGTATGGTTTTTAAGCTTAGGCACCCATCCCTATGTAGAAGTTCTTAAGTTAAGGCTCCCATTTCAAATCAAAATCCAAACTTGATATACTTCCTTCTCTTGAGGCTGAGGGCTCCACCCCATAGCATGGTTTCACAGAGAAAGAAGCCTAAAAACAACTACAAGTGGTGCAAGTGCAGGGAAAGAACCAAAAACCGAGCAAACTGCTAGCTGCTGGTGGTTTGGTTTGTAACCAGTTTAGGTTGGTCGTTTCGGTTTGTGTAGAGAAAACTGGTCAAATTTGTTTGGTTCCAAGTTTTGCATGAATCAGAACGAATAAACTTGAAACTGACCGATAATATGTATTGTGATAATCATAGTACACTCTGAAAGGGCACATCAATGCAGATGGTTGCAAGCCCCCTTAGGAACTGCGTAGGGTACCACCAGTTTTTTGCCCATTAGTTAATCACCTACAGCGGGCTGCTCTGAAAAAATTCCAAATCTTTATTTGACTGGTCCACAGTTTTGCAGGCTCACCTCCAGCCAAGCCCATGGAATGATGAACAAGTCAGAAAATTCAATAAATGGTGAACCGTCTGTTAGGTACCTAGATTTAGATAGAGTTAAGGGTAGTTAGTTACATAAGGCAATTCGATGGTTATAAATAGGAAGTTGGGGAGGGAAGAAAGACATGGAGAATTTGGTGAAGTTAATGGGCTGCAACATTCCTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTCTTTTACTTGTTTGTTCTTTAGTATTGTAATTTTCTGTTTGAGATATCAGTAAAATAGAAACACTATATCAGTGTTCTATTACTGTCAAACCAAACTGATTGAACCGTCAATTTACCGGTTGAGCGGTTAGGTTGGTTTAATGTGTTTGTTTGGTTCTGCCTTAACATTTCTTTGATATTCTAATCGGTTTTACTTGAGCACCCAAACTGAGCTGAACCAACTAGAATACACCACACCCCCAACAACTTCTGCAAGTCTTCAATTTTACCCCTTCAATTTTACCCTTTTCTTGGGTGGGGTTATGAATTTTTGGCATTTGAGGGTCTAACTGTGATCCTTCCGAGGCTTACTATTCAGTATATTTCCAAATTGTAGAATATACTATTGGTGCTAAATGTTTTGCTAGGACTGGAATTTATTTTTGTTGACTTCTTGCTTAAGAGTATTTTCTTTCCTCTTTCCAGGAGAAGCCCAATTTCCATTGCAGCAGCAGTTATTTATATTATTACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGGTAAATATTAACTGCCAAAATGTTTGATACTGATTCTACCGATTGTTTTTAGAATCTTTGGTTTTCCACTCGAAACAAAATTTGACCCCTATATTCCTTAGCATAGTTGTCATCAGCCTTGATATGAAATTTGATAGAATTTTATGCATTAAATGTGTGGCTCTGATTTGAGTGCAGATATATCGGTAGCTACTGGTGTTGCGGAAGGAACAATCAGAAATTCATATAAAGATCTCTATCCACACGTGTCGAAGATATTACCGGGTTGGTATGCTAAAGAGGAGGATCTTAAGAACCTCTGCAGTCCTTAAAATGTAGAGCAAAGCGACAACGACGTATGACGGGAATTTAATCAAAATTGAAGTTACTCTTTTTCTTTAGCCTTCTTGTACTTAAAAACTCTTTGAGATTTGCTAGAAAGAAAATCTCCACCTTCTGCTTCTCCTTTTTCTAAATAGATTTATTGCCATTATGAAATTCTAAATGACCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACTTGCCCCATAGTTTTCACCTCATTCACAATGAAAAGTTGTCCAAAATTTTGTGATGCTCTCATGACTTTATCAATATCAACATTTAGCATTTGCCTCAAGTTTACACCCATTTTTAGCGGTTCTTATGGCTCCCCAAGGGTTTAAAGATTGGTTGGTATTTCGACTTTG

Coding sequence (CDS)

ATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGA

Protein sequence

MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKVCSF
Homology
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BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match: Q9SS44 (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.8e-92
Identity = 164/178 (92.13%), Postives = 173/178 (97.19%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG++G+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 179
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match: P48513 (Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.6e-89
Identity = 165/179 (92.18%), Postives = 168/179 (93.85%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPN-GTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 120
           GP+NPLL DGGLSTVIAKPN G  GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120

Query: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 179
           GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 GLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 179

[Close]
BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match: Q8W0W3 (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIB PE=1 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.1e-85
Identity = 151/178 (84.83%), Postives = 163/178 (91.57%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSD+FC DCK+ TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNG  GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 179
           LVATIKDRANEIYK+VED KS RGRNQDA+LAACLYIACRQED+PRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match: P48512 (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-82
Identity = 147/178 (82.58%), Postives = 165/178 (92.70%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG++G+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 179
           LVATIKDRANE+YKR+EDQKSSRGRNQDAL AACLYIACRQEDKPRT+K I  + +GA
Sbjct: 121 LVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match: P29052 (Transcription initiation factor IIB OS=Drosophila melanogaster OX=7227 GN=TfIIB PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-38
Identity = 85/168 (50.60%), Postives = 111/168 (66.07%), Query Frame = 0 

Query: 6   CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
           C     ++ ++ D+ AGD +CSECGLV+    ID  SEWRTF+NE    DP RVGGP NP
Sbjct: 13  CCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENP 72

Query: 66  LLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVA 125
           LL+ G LST+I  P   +  F +    ++QNR   S+ DR LI AFK I++M+DR+ L  
Sbjct: 73  LLSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPK 132

Query: 126 TIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGI 172
           TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT K I
Sbjct: 133 TIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEI 179

[Close]
BLAST of Cucsat.G7980 vs. NCBI nr
Match: XP_004150610.1 (transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTED: transcription initiation factor IIB-2 [Cucumis melo] >KAA0043603.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa] >KGN54643.1 hypothetical protein Csa_012330 [Cucumis sativus] >TYK29758.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (892), Expect = 1.60e-118
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. NCBI nr
Match: XP_022152227.1 (transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 transcription initiation factor IIB-2 [Cucurbita moschata] >XP_022967855.1 transcription initiation factor IIB-2 [Cucurbita maxima] >XP_023544538.1 transcription initiation factor IIB-2 [Cucurbita pepo subsp. pepo] >KAG6603201.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346 bits (888), Expect = 6.48e-118
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. NCBI nr
Match: VVA30928.1 (PREDICTED: mRNAion [Prunus dulcis])

HSP 1 Score: 343 bits (880), Expect = 6.97e-118
Identity = 169/178 (94.94%), Postives = 173/178 (97.19%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. NCBI nr
Match: XP_028766652.1 (transcription initiation factor IIB-2 [Prosopis alba])

HSP 1 Score: 346 bits (887), Expect = 9.20e-118
Identity = 171/178 (96.07%), Postives = 173/178 (97.19%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG TGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGATGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. NCBI nr
Match: XP_024032773.1 (transcription initiation factor IIB-2 [Morus notabilis])

HSP 1 Score: 343 bits (880), Expect = 9.89e-118
Identity = 169/178 (94.94%), Postives = 173/178 (97.19%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLI+AFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLIVAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match: A0A803R147 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 5.63e-119
Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIA 172
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKG A
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGTA 172

[Close]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match: A0A5D3E1U7 (Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00120 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 7.73e-119
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match: A0A0A0KYQ5 (TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 7.73e-119
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match: A0A1S3C1T7 (transcription initiation factor IIB-2 OS=Cucumis melo OX=3656 GN=LOC103495880 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 7.73e-119
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

[Close]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match: A0A6J1HVL0 (transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC111467238 PE=3 SV=1)

HSP 1 Score: 346 bits (888), Expect = 3.14e-118
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKGIAPLISGA 178
           LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK I  + +GA
Sbjct: 121 LVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGA 178

The following BLAST results are available for this feature:
BLAST of Cucsat.G7980 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SS445.8e-9292.13Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 ... [more]
P485134.6e-8992.18Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1[more]
Q8W0W33.1e-8584.83Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
P485121.4e-8282.58Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 ... [more]
P290521.6e-3850.60Transcription initiation factor IIB OS=Drosophila melanogaster OX=7227 GN=TfIIB ... [more]
BLAST of Cucsat.G7980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150610.11.60e-11896.63transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTE... [more]
XP_022152227.16.48e-11896.07transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 tran... [more]
VVA30928.16.97e-11894.94PREDICTED: mRNAion [Prunus dulcis][more]
XP_028766652.19.20e-11896.07transcription initiation factor IIB-2 [Prosopis alba][more]
XP_024032773.19.89e-11894.94transcription initiation factor IIB-2 [Morus notabilis][more]
BLAST of Cucsat.G7980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A803R1475.63e-11998.26Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5D3E1U77.73e-11996.63Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0KYQ57.73e-11996.63TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 ... [more]
A0A1S3C1T77.73e-11996.63transcription initiation factor IIB-2 OS=Cucumis melo OX=3656 GN=LOC103495880 PE... [more]
A0A6J1HVL03.14e-11896.07transcription initiation factor IIB-2 OS=Cucurbita maxima OX=3661 GN=LOC11146723... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 19..39
score: 54.6
coord: 41..54
score: 50.0
coord: 55..76
score: 59.09
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 3..126
NoneNo IPR availableGENE3D1.10.472.170coord: 5..129
e-value: 3.7E-37
score: 130.1
NoneNo IPR availablePANTHERPTHR11618:SF69TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 3..126
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 4..50
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 6..47
e-value: 1.3E-15
score: 56.6
IPR013137Zinc finger, TFIIB-typePROSITEPS51134ZF_TFIIBcoord: 2..34
score: 9.105444

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G7980.T9Cucsat.G7980.T9mRNA
Cucsat.G7980.T5Cucsat.G7980.T5mRNA
Cucsat.G7980.T4Cucsat.G7980.T4mRNA
Cucsat.G7980.T7Cucsat.G7980.T7mRNA
Cucsat.G7980.T6Cucsat.G7980.T6mRNA
Cucsat.G7980.T15Cucsat.G7980.T15mRNA
Cucsat.G7980.T13Cucsat.G7980.T13mRNA
Cucsat.G7980.T12Cucsat.G7980.T12mRNA
Cucsat.G7980.T2Cucsat.G7980.T2mRNA
Cucsat.G7980.T16Cucsat.G7980.T16mRNA
Cucsat.G7980.T1Cucsat.G7980.T1mRNA
Cucsat.G7980.T10Cucsat.G7980.T10mRNA
Cucsat.G7980.T14Cucsat.G7980.T14mRNA
Cucsat.G7980.T11Cucsat.G7980.T11mRNA
Cucsat.G7980.T3Cucsat.G7980.T3mRNA
Cucsat.G7980.T17Cucsat.G7980.T17mRNA
Cucsat.G7980.T18Cucsat.G7980.T18mRNA
Cucsat.G7980.T8Cucsat.G7980.T8mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070897 transcription preinitiation complex assembly
biological_process GO:0006413 translational initiation
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0097550 transcription preinitiation complex
molecular_function GO:0017025 TBP-class protein binding
molecular_function GO:0003743 translation initiation factor activity