Cucsat.G7980.T6 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G7980.T6
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTranscription initiation factor IIB
Locationctg1556: 1476014 .. 1483085 (-)
RNA-Seq ExpressionCucsat.G7980.T6
SyntenyCucsat.G7980.T6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTGAAACACATTCTATTGGTCCAACTAAGCTTTCTCATCCACGAAACTTCCATGAGTTTCCTAATTCCCCAAAATCATCTCTCTATAAATACCCTCTTCTTCTTCCCTTTCAACTCTCCCCTTTCAATTTCCCTCCCTCATCGTCGAAAAATCTATTACCGACGCCTCACCTGAGCAGCCAATCCCAATTTCTCCCCGGAACCAACATTCATCTCTCTTCTGCTCCCCAATTCCCCGCTTGCTCAAGCTTTTTTAGGGTTTAGAAGAGCCCAGGAGGAGGAGGAGGAGGAGGAGGAGCTGGTTGTGAACAATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTAAGGGGGTTTGATGTTTTGGATGCTGCTGAGGAAGATTGGAATTTGTTGGATTTCTCTTTATTGAGCTGCATCTTGATTTCCTTTCCTAACCCAGATAGGCTTAAACAGATCGAATTGGGACTGTGGAGGGGTGGGAATTGGGAAATCGTAGTAAATTAAGGTTTTCTTGTATTCGTGGGGGAACTTCTGATCATGGATACAAATTTTGTGAACTGATTGTTGGCTCGGTGGTTGCTTAGGATTCGGGTCCTGCAGCTGGGGCTATTGGAAAAACTTTAGTCCTTTAAAGAAACGTTTTTTTTATGCTTGGTAGAAAAATTGATTAAAATCTTTGGATTAGTGATCTTATCTTATTTGTGGAATTGACTAATCGGAATTTAGAAACTTGGAGTTGAGCTAAGAAGTCATGTAAATGAAAAGCCAATCTGGGTAGATCTTTTGGAGGAGAATATCGACTTGAAACATATACCCATGCTGTAGATGTGCACTTATGTGGTTGAGCTGAATTTAATGAAATGGTTCTTCAGGTCTGGAATGCCCAGGAACAAAACGTTTTGAGTTGAATTTTCTTGTAGCTTTTGCTTTATTTCTTCAATATTCTGGCAAGCAACTTTGTTGGTGGAATGGGAATGGTATATCTTAAGTTCACACAATTAGGTTGATTTACCTTGTCACTTTGGAGTTCCGAATTTTTTTTATTCATACTGGGGGAAGCCACTTCTCTAATTGGAATTAAGTAGTGAATAAACTTTTCTGTTATCGTCCTTGCCACTGGTCATGGATCGTTCTTTGGGGTTTTCATATTTTAGTTCATTTTATGGTCTTCTTGTAATGTAATTATAAATTTTGGGCTGCTTAGTATAAGTACCCCAACTTTGAGTTATGATAAGATGAAACTGATTTATAATGTTTAATAAATATATGAGTTTGCCACATTTAGAAAGGACTAATACAGCTAGCTTTATTGTGTTTCAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGACCCATTATGACATAATTCCACGAGTTTCCATTTCATGTATTTTCTCAAAGCATTCAGGTTAGTTGTCAGTATAGAATGATCATGCAGTATTCTCAAGGTTTGAGATAATGTATGTTTCATAGTTTTTGTTAAACATTTATCTGGAAGTGATGCACAATGAATGAATGACCAAAGGAATCGTCAGATATATACGGTTCAAGTTCACATACCCACACACACACATATAGATAAGGAACAACACTCACTATGAAAAAGGAGGTTATAAAGGATGGGAGATGTGTTTCCCTGCCTAGCTATGTGGATTACAAAATGCTTTTCAGTTGGTTTAAATTTGAAGAGAAAGTAAAGAAAAACATTATTAAAGATTAAACACCAGCATAAAGTGTGAGCCCTGAACGTGGGATTGAAGACCATGCGAATTGTGTGATGTAAGCCTAGAATAGAAAATAACCAAAATTTTCAGAGAGACAGAAAATTCTATAATTTCTAGATTATGCATGCCTCAATAGTTGAGTCACTTCACGCACTGGCTTATTGGTATTAGCCTCAGGACTAACAAGTGTGTTATGGCTTCATTTTGTTGTTTGTGGTCACAAAACACATCTTGAAGGTAGAATGCTGTTGATCAAGGGTTGAAAGCAGCAAAAGGGAGAGGAATTTATGGAAAATTAACAACACAAATATTGAGGAGACTGAATAAGGAGGTTGAAACTTCAAAGCCACAACCATTTAGCTAAAAGGAGGGCTTTGTTACTCATCCTAAAGTTTCCAATTTCCAAACCTCCGAAAGATACTGGTCTCTCAATAACCTTGCACCTAAACAAACCTTTTCCTCTTCTTTCACAAATCCCTTCCTAGAGGAAGTCACACATCAACCTCTCCAAACACTTCATACCTCACACAGAGCCCTAAAAAGAGAGAAGAATACATGGACATTAAGTTCTGCCTACGGGAAAAAATATTCTGTATACTTTCATTAATTCCCGTCTTTATTCATCTACAACAGACTGTTGATTTATCACAAGTACAGTGTGTTTTTAAAGAAACTTGGTAGAATTTTTAAAAACACATTGTAGCTGTTGTGATAAATCAGTGTATGTTATAGATTGAGTAAAGACAGGACTTAATTGTGTTTAAACACGACTAATGAATTTATACCACGTAGATATTTTAATAAAATATTTAGTTTATATAAGAAAAAGTCTTTATGAGGACAAATGCGTAAGGAAGTTAAGGAAGAGGCTTGTGGCATCTGGAAGAATGAATATTGGTGATTGAGTGAGGAAGTTGAGCATTATCAGAAGGAAACGTAGGAGACAGTAAATTACACTGGTTAATGGGTGAAAGAAAAAGAAATTGTCTATAATATTGGAGAATTCTCTAGAAGCAGCCAATTAGATAATACTTGTAGCCAATTAGATAATACCTGTATAAAGAATTTTCTGTTATTCGTTCTACCTTTTGGGTAGATGAGACACTGAGTTTAACATCATCAACAGATTAATAATGAGAGTGTTAGAATTTTTTGCCTGGGGGTGGAGAGTTTGACTGCTTCTTCTTGGGTGTCTACTAAATTTTAACTTTTGTTATCTGTGGCAATTGTACTTTTGTCTTTCCTATAAAGATGTATTTGTAGAAGGGCTTTTTTTTTCGTTTCTTTTTTTCCATGGTGTTTTTTGCATTCTCTCTGCGAATAAATAGTTTTTCATTAAAAAATAGATTTGCTTCCTATCAAAAGAGGTGATTCAATGTTTTACATTTGATTTTGATTGACTAAGAGGTCATGGGTTTAATCCATGGTTAGCCACCAATTTTCTGAGTTTCTTTGACATCCAAATGTCGTAGAGTCAGGTAGGTGACGTGAGATTAGTTGGGATGCGAGTATATCTAGGTCGAACACTCACACACAAAAAAATAATAATTACATCCGATCTGTTATTGGATCCAAATGCAATATTTAAGAAAAAAATATTCAAGTTTGGAATTATGTTTATTCAGTTTGTTAAATGTTTATGAATTTATTCTTCGCAGTTGCTACATGCTGTGGTACAGTTCTAATGTGATTGTAGTTGCAACCATTGATAGGATAACTTGTGAAGATTACAATCTGAAGTCTTTGAATTTCTGGCCAAGTTACTTTATAATGAAATTGTTCCTCCAAACTGTAAAGTGCCGTAGACTAATTATTCAAACAAGGAAAATTCCTCTGGTCCAGAATAGGTTTACATGAAATTATATACCGGTATTATATGATTTGGATATCAGCTTAGTTTTAGATTGCTTTTCTCTATATCATTCATTTCTCTAGCAAGTGATCTTTGAAGATGTTTAATTTTCTTAAACGATTTTCTCATTTATTAATTACATACAGGATCGGGCCAATGAGATATATAAAAGAGTAGAAGATCAAAAATCTAGTAGAGGAAGAAATCAAGATGCTTTATTGGCTGCTTGCTTATACATTGCTTGTCGACAAGAAGATAAACCCCGCACGGTCAAGGGTATTGCTCCTTTGATATCCGGAGCATTTGTGGTTTAATTTCTATACTTAACTAACCATGCTGATTTTGATTAGAAATTTGCTCTGTTGCCAATGGGGCAACAAAGAAGGAGATTGGGCGAGCAAAAGAATACATTGTGAAACAGTTGGGGTTGGAGACAGGTCAGTCTGTAGAGATGGGGACAATACACGCTGGAGACTTTATGGTGAGGCTTTTGGTGAAAAAAATTCACTTCGAGTTTTTGACCTTGATCATGGACAATATGTCGTTTGTTTCTTCTTATGTCATTTTTTTCTTAAATGAATATAGAGGCGTTTTTGTTCAAATCTTGGGATGAATAATCAAGCTGTTAAAGCTGCCCAAGAAGCTGTACAGAAATCTGAAGAGTTTGATATTCGGTAACGTTTGTTTTCTTTGGTTGTTGTGAGATTATGAATTTATTGTTTTAGCTTTCTTCTTTATGGTCATTTGTTTGGTTGGTTAGTTAAGTATTCTCTGAACTCTGAGAAGTTACTTCTGTGTTTATGTTTGACAAAATTCACCCTGTGAACAACTACAGATCCCTCTTCTGGTCTGGCAGTAGTAGCCAAAGTTTTTTCCCATTCCAAAACAAAAAAAAAAAAAAAAAAAGAGGGTAAAAGGGAAAAAAATATTTATAATTGGTTTCCATGAAGTCAGTCTCTTATCGACTATGGGCAGACCTAAGGTTGAATGTTACAGTTAAATAGGTGCTTGCTTTGCTCACTGCCTCATGTTGATCTCTTTGATCTCTAACTTAGAATTGAAATATTTTTATCTCTGAGCAGAGCTTTAGAATATACTTTCATATTTTCATCATTCACGATTATTAGCTTTGCCTATTCTCGGAATATTGAACTTGATATGCTTATTAGAAAATGTAGAAGTTTAAGTATGGTTTTTAAGCTTAGGCACCCATCCCTATGTAGAAGTTCTTAAGTTAAGGCTCCCATTTCAAATCAAAATCCAAACTTGATATACTTCCTTCTCTTGAGGCTGAGGGCTCCACCCCATAGCATGGTTTCACAGAGAAAGAAGCCTAAAAACAACTACAAGTGGTGCAAGTGCAGGGAAAGAACCAAAAACCGAGCAAACTGCTAGCTGCTGGTGGTTTGGTTTGTAACCAGTTTAGGTTGGTCGTTTCGGTTTGTGTAGAGAAAACTGGTCAAATTTGTTTGGTTCCAAGTTTTGCATGAATCAGAACGAATAAACTTGAAACTGACCGATAATATGTATTGTGATAATCATAGTACACTCTGAAAGGGCACATCAATGCAGATGGTTGCAAGCCCCCTTAGGAACTGCGTAGGGTACCACCAGTTTTTTGCCCATTAGTTAATCACCTACAGCGGGCTGCTCTGAAAAAATTCCAAATCTTTATTTGACTGGTCCACAGTTTTGCAGGCTCACCTCCAGCCAAGCCCATGGAATGATGAACAAGTCAGAAAATTCAATAAATGGTGAACCGTCTGTTAGGTACCTAGATTTAGATAGAGTTAAGGGTAGTTAGTTACATAAGGCAATTCGATGGTTATAAATAGGAAGTTGGGGAGGGAAGAAAGACATGGAGAATTTGGTGAAGTTAATGGGCTGCAACATTCCTTGAAAGAAAGGAAGGGCAGAGGGTTAGGGTTCTTTTACTTGTTTGTTCTTTAGTATTGTAATTTTCTGTTTGAGATATCAGTAAAATAGAAACACTATATCAGTGTTCTATTACTGTCAAACCAAACTGATTGAACCGTCAATTTACCGGTTGAGCGGTTAGGTTGGTTTAATGTGTTTGTTTGGTTCTGCCTTAACATTTCTTTGATATTCTAATCGGTTTTACTTGAGCACCCAAACTGAGCTGAACCAACTAGAATACACCACACCCCCAACAACTTCTGCAAGTCTTCAATTTTACCCCTTCAATTTTACCCTTTTCTTGGGTGGGGTTATGAATTTTTGGCATTTGAGGGTCTAACTGTGATCCTTCCGAGGCTTACTATTCAGTATATTTCCAAATTGTAGAATATACTATTGGTGCTAAATGTTTTGCTAGGACTGGAATTTATTTTTGTTGACTTCTTGCTTAAGAGTATTTTCTTTCCTCTTTCCAGGAGAAGCCCAATTTCCATTGCAGCAGCAGTTATTTATATTATTACTCAGCTTTCAGATGATAAGAAGCCTCTGAAAGGTAAATATTAACTGCCAAAATGTTTGATACTGATTCTACCGATTGTTTTTAGAATCTTTGGTTTTCCACTCGAAACAAAATTTGACCCCTATATTCCTTAGCATAGTTGTCATCAGCCTTGATATGAAATTTGATAGAATTTTATGCATTAAATGTGTGGCTCTGATTTGAGTGCAGATATATCGGTAGCTACTGGTGTTGCGGAAGGAACAATCAGAAATTCATATAAAGATCTCTATCCACACGTGTCGAAGATATTACCGGGTTGGTATGCTAAAGAGGAGGATCTTAAGAACCTCTGCAGTCCTTAAAATGTAGAGCAAAGCGACAACGACGTATGACGGGAATTTAATCAAAATTGAAGTTACTCTTTTTCTTTAGCCTTCTTGTACTTAAAAACTCTTTGAGATTTGCTAGAAAGAAAATCTCCACCTTCTGCTTCTCCTTTTTCTAAATAGATTTATTGCCATTATGAAATTCTAAATGACCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAACTTGCCCCATAGTTTTCACCTCATTCACAATGAAAAGTTGTCCAAAATTTTGTGATGCTCTCATGACTTTATCAATATCAACATTTAGCATTTGCCTCAAGTTTACACCCATTTTTAGCGGTTCTTATGGCTCCCCAAGGGTTTAAAGATTGGTTGGTATTTCGACTTTG

Coding sequence (CDS)

ATGTCTGATGCGTTCTGCTCTGACTGCAAGCGTCAGACTGAGGTTGTTTTCGACCATTCCGCCGGAGATACCGTGTGTTCCGAGTGTGGTCTTGTCCTTGAATCCCACTCCATCGATGAGACCTCCGAGTGGAGGACTTTTGCCAATGAGTCTGGGGATAACGACCCGGTTCGTGTTGGTGGACCCACAAATCCTCTTTTGGCTGATGGTGGACTTTCCACGGTGATTGCGAAGCCTAATGGTACCACTGGGGAGTTCTTGTCCTCGTCGTTGGGTCGGTGGCAGAATCGTGGCTCCAATCCAGATCGAGGGTTGATTCTTGCTTTCAAGACCATTGCTACTATGTCTGATAGGTTGGGCCTTGTTGCAACCATAAAGGTATGCAGTTTTTGA

Protein sequence

MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKVCSF
Homology
[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q9SS44 (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-64
Identity = 118/126 (93.65%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKR TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGL+TVI+KPNG++G+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLG
Sbjct: 61  GPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLG 120

Query: 121 LVATIK 127
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: P48513 (Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-61
Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPN-GTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRL 120
           GP+NPLL DGGLSTVIAKPN G  GEFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRL
Sbjct: 61  GPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRL 120

Query: 121 GLVATIK 127
           GLVATIK
Sbjct: 121 GLVATIK 127

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q8W0W3 (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIB PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-60
Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSD+FC DCK+ TEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVG
Sbjct: 1   MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNG  GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 121 LVATIK 127
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: P48512 (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-56
Identity = 105/126 (83.33%), Postives = 118/126 (93.65%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+C+DCK++TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVG
Sbjct: 1   MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLAD  L+TVIAKPNG++G+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLG
Sbjct: 61  GPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLG 120

Query: 121 LVATIK 127
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match: Q9LIA6 (Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-24
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANES--GDNDPVR 60
           M +  C DCKR T +V DHS+GDT+CSECGLVLE+H I+ + EWRTFA++    D DP R
Sbjct: 1   MEEETCLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNR 60

Query: 61  VGGPTNPLLADGGLSTVIAKPNGTTGEFLS----SSLGRWQNRGSNPDRGLI-LAFKTIA 120
           VG  TNP L  G L T+I KP  T    LS    S+L R  N+  N +  LI  AF+ I 
Sbjct: 61  VGAATNPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQ 120

Query: 121 TMSDRLGL 122
            M+D L L
Sbjct: 121 RMTDALDL 128

[Close]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: XP_004150610.1 (transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTED: transcription initiation factor IIB-2 [Cucumis melo] >KAA0043603.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa] >KGN54643.1 hypothetical protein Csa_012330 [Cucumis sativus] >TYK29758.1 transcription initiation factor IIB-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 1.02e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: KAG7033507.1 (Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257 bits (656), Expect = 2.45e-83
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIKV 127
           LVATIKV
Sbjct: 121 LVATIKV 127

[Close]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: KCW90140.1 (hypothetical protein EUGRSUZ_A02331 [Eucalyptus grandis])

HSP 1 Score: 253 bits (646), Expect = 2.95e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M+DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: XP_022152227.1 (transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 transcription initiation factor IIB-2 [Cucurbita moschata] >XP_022967855.1 transcription initiation factor IIB-2 [Cucurbita maxima] >XP_023544538.1 transcription initiation factor IIB-2 [Cucurbita pepo subsp. pepo] >KAG6603201.1 Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (653), Expect = 4.11e-83
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match: VVA30928.1 (PREDICTED: mRNAion [Prunus dulcis])

HSP 1 Score: 253 bits (645), Expect = 5.27e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDA+CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A803R147 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 1.62e-84
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNG +GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A5D3E1U7 (Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00120 PE=3 SV=1)

HSP 1 Score: 257 bits (657), Expect = 4.92e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A0A0KYQ5 (TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 PE=3 SV=1)

HSP 1 Score: 257 bits (657), Expect = 4.92e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A1S3C1T7 (transcription initiation factor IIB-2 OS=Cucumis melo OX=3656 GN=LOC103495880 PE=3 SV=1)

HSP 1 Score: 257 bits (657), Expect = 4.92e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

[Close]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match: A0A059DIR8 (TFIIB-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02331 PE=3 SV=1)

HSP 1 Score: 253 bits (646), Expect = 1.43e-83
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0 

Query: 1   MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60
           M+DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG
Sbjct: 1   MADAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVG 60

Query: 61  GPTNPLLADGGLSTVIAKPNGTTGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120
           GPTNPLL DGGLSTVIAKPNGT+GEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
Sbjct: 61  GPTNPLLTDGGLSTVIAKPNGTSGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLG 120

Query: 121 LVATIK 126
           LVATIK
Sbjct: 121 LVATIK 126

The following BLAST results are available for this feature:
BLAST of Cucsat.G7980.T6 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SS441.3e-6493.65Transcription initiation factor IIB-2 OS=Arabidopsis thaliana OX=3702 GN=TFIIB2 ... [more]
P485131.0e-6193.70Transcription initiation factor IIB OS=Glycine max OX=3847 GN=TFIIB1 PE=2 SV=1[more]
Q8W0W32.5e-6087.30Transcription initiation factor IIB OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
P485121.6e-5683.33Transcription initiation factor IIB-1 OS=Arabidopsis thaliana OX=3702 GN=TFIIB1 ... [more]
Q9LIA62.8e-2450.00Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 ... [more]
BLAST of Cucsat.G7980.T6 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150610.11.02e-83100.00transcription initiation factor IIB-2 [Cucumis sativus] >XP_008455781.1 PREDICTE... [more]
KAG7033507.12.45e-8399.21Transcription initiation factor IIB-2, partial [Cucurbita argyrosperma subsp. ar... [more]
KCW90140.12.95e-8397.62hypothetical protein EUGRSUZ_A02331 [Eucalyptus grandis][more]
XP_022152227.14.11e-8399.21transcription initiation factor IIB-2 [Momordica charantia] >XP_022928717.1 tran... [more]
VVA30928.15.27e-8397.62PREDICTED: mRNAion [Prunus dulcis][more]
BLAST of Cucsat.G7980.T6 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A803R1471.62e-8498.41Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A5D3E1U74.92e-84100.00Transcription initiation factor IIB-2-like OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0KYQ54.92e-84100.00TFIIB-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G415910 ... [more]
A0A1S3C1T74.92e-84100.00transcription initiation factor IIB-2 OS=Cucumis melo OX=3656 GN=LOC103495880 PE... [more]
A0A059DIR81.43e-8397.62TFIIB-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000812Transcription factor TFIIBPRINTSPR00685TIFACTORIIBcoord: 19..39
score: 54.6
coord: 41..54
score: 50.0
coord: 55..76
score: 59.09
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 3..126
NoneNo IPR availableGENE3D1.10.472.170coord: 5..129
e-value: 3.7E-37
score: 130.1
NoneNo IPR availablePANTHERPTHR11618:SF69TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 3..126
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 4..50
IPR013137Zinc finger, TFIIB-typePFAMPF08271TF_Zn_Ribboncoord: 6..47
e-value: 1.3E-15
score: 56.6
IPR013137Zinc finger, TFIIB-typePROSITEPS51134ZF_TFIIBcoord: 2..34
score: 9.105444

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G7980Cucsat.G7980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G7980.T6.E1Cucsat.G7980.T6.E1exon
Cucsat.G7980.T6.E2Cucsat.G7980.T6.E2exon
Cucsat.G7980.T6.E3Cucsat.G7980.T6.E3exon
Cucsat.G7980.T6.E4Cucsat.G7980.T6.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G7980.T6.C2Cucsat.G7980.T6.C2CDS
Cucsat.G7980.T6.C1Cucsat.G7980.T6.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G7980.T6Cucsat.G7980.T6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0070897 transcription preinitiation complex assembly
biological_process GO:0006413 translational initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0097550 transcription preinitiation complex
molecular_function GO:0017025 TBP-class protein binding
molecular_function GO:0003743 translation initiation factor activity