Cucsat.G7817.T5 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G7817.T5
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionvascular plant one zinc finger protein
Locationctg1556: 1623719 .. 1625916 (+)
RNA-Seq ExpressionCucsat.G7817.T5
SyntenyCucsat.G7817.T5
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAACCATTCATGTTCTTCTCCTTCTACTCTGGTGCATATCATCGGTCGTCTGATGCCGTTCGTGGGTGACCTAAAAGATCTGAACTAAGAGCCAAAGCTACACTGATTACTTCTCTAAGGAAAAAACTACCCCCTAATCTTCTTCCTCCAAGTTTTCCCATGATTTTCGACCCAAATAGTATGCAATTTGGCGGTTAACTGTTCTTTGTTTATTCCAGTTCTTTTCTTTTCTTTAAATACGTGAATTAGGGTTGAATTAAGCGACCGCTTACTTAGTCGAATCTTTGATGATGGCACGTAGAGATCACGATGAATTAGTACATGATAGAAAAACACGTTTAAGATTTTGCCAAAATTTTAAGTAGAGAGCTAGGTAAGGATGAATTAGCTTAGGTGAAACTTTGTGATCATCTTATGATTGGTACAATGGTTACAATTTTACTTGTTTCCAATTCAGTCTCCTATTTTCTGAACTGAGTTAGAGGAAGTGGATGAATATTCAACAGTAGCATTACAAATGTATTTGTTTCGATAGCCCATATGATTTTTTTTCCTTTTGGGTAGGTTCTGTTTTGCAATCTGAACGGACTTTATATAAAGGGTCGGTGCTTCATTGTGATTTCTTTTTCTTCAGTTGCTGCTAAAATAATTTTGGTGGAAGGAAAGAGACGAATGGATGTCGAAGGGTTTGAAGAGTAAATGTCAATCTACTTCTCATCAGCTTTTGAAGGAAAGAGCAAAGAATTGTGTTAATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCATTTGTCGTAAGTTTTTTTTTTCAACTTTCTTTCCCCTTTGCCAAGGATGGTTTTGTCTTCCATCACTTTTGTGTAATCTAAATGTCTGTAAACATTCAATCAGTAGTGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCATCTTCTTGGGCATTGTGATGAGCAAGATGATGCAACTAGTACATTTGTTGAACCAAAGGCTAAACCTGAACTCCGTTGCATGCGTTCTTGGTAGCAATCCGTTAAATTTTGTACAAGTAGGCTTTTTCTTCATTTTCTTTTTTAGTCTAACTCCATCTTTCAACGGGTGAATAATGTGTTCACTAGCCTTCCTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGTATTGCCAATTAAAAACAATGCACAAAGCTTCTTAACCATTTAACAAAGTTCTATTAATTGCACTTGAGACATAATCTTGTAGTGTTTTCTATTTTATGTCATTTGCTGGAAACTGGCTGGTTTCTCTTGGGATCCATGTCTACAAGCCCAACTTCTTAAAACATGTGACTTTTTCTATTGGATTAGTTGTTGTTTGCCTCTTATTTGTGATGACAGTATCTGCATAACAGTTGTGAGAATTGAGGCTTATCAATTAATCCAGCCTGATTTTTTTATTTTTTTTGTCATTATGGTATATGTGCTTCTATTGTTGTTGTTTGTGATTTTCTGATATTACATTTCTTGATGAGGAGACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAGAAACACAACCTTTGGGTTGACTACATTTTATCCATATTCCATGAACTAGAAAAGTAATTTGCACAACAATTGGTGGATTGATGAATTCAGTGGCTCGTTATGTTGTTTTACCACATGAAAATGGTCATTGTAGTTTTACTATTCGATTGAGTAACATATTAGTGGGGAAAGGAATTGTAAGCTTTAATATTTAATATTACAATATATCTACATTAGGTGTACATATAACCATCTTCCACCAGTAGTTTCTAATAATCCATAGCACTAAATAATTTTTAGTTTTTCTTTTATACTTTCAATGGAATAAAATTATAAGGCACATTATTC

Coding sequence (CDS)

ATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCATTTGTCACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAG

Protein sequence

MTLKGYSLIFKMQGRRVVLLTLLSWRSESIICSGSGMLSLMNLHLHLHLSQSGKNSTSTSLDGPFKSDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS
Homology
[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy Swiss-Prot
Match: Q9SGQ0 (Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.3e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKS-YMDPQ 105
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+S YMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy Swiss-Prot
Match: Q9SLB9 (Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRK-LVMEFGGQKKS-YMDPQ 105
           + S NRKQRSLPDY+GRGWHESRK L+ E  GQK+S YMDPQ
Sbjct: 338 YDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQ 379

[Close]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match: XP_011649982.2 (transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor VOZ1 [Cucumis sativus] >XP_031736625.1 transcription factor VOZ1 [Cucumis sativus] >XP_031736626.1 transcription factor VOZ1 [Cucumis sativus] >KAE8652275.1 hypothetical protein Csa_021797 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.50e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match: XP_008455940.1 (PREDICTED: transcription factor VOZ1-like [Cucumis melo] >TYK09550.1 transcription factor VOZ1-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.51e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match: KAA0067448.1 (transcription factor VOZ1-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.51e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match: KAG6570910.1 (Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 3.49e-13
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDYNGRGWHESRK VM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYNGRGWHESRKQVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match: XP_022140419.1 (transcription factor VOZ1-like [Momordica charantia])

HSP 1 Score: 75.9 bits (185), Expect = 3.49e-13
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 343 FESGNRKQRSLPDYKGRGWHESRKLVMKEFGGQKKSYYMDPQPS 386

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match: A0A0A0L207 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 2.53e-29
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 

Query: 67  SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 118
           SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS
Sbjct: 2   SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS 53

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match: A0A0A0LT50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.17e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 323 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 366

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match: A0A5D3CDY9 (Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00330 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.21e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match: A0A5A7VI89 (Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001130 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.21e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match: A0A1S3C2S3 (transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.21e-13
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSY-MDPQAS 106
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSY MDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

The following BLAST results are available for this feature:
BLAST of Cucsat.G7817.T5 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SGQ04.3e-1180.95Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1[more]
Q9SLB91.5e-0873.81Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2[more]
BLAST of Cucsat.G7817.T5 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011649982.22.50e-1386.36transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor... [more]
XP_008455940.12.51e-1386.36PREDICTED: transcription factor VOZ1-like [Cucumis melo] >TYK09550.1 transcripti... [more]
KAA0067448.12.51e-1386.36transcription factor VOZ1-like [Cucumis melo var. makuwa][more]
KAG6570910.13.49e-1386.36Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022140419.13.49e-1386.36transcription factor VOZ1-like [Momordica charantia][more]
BLAST of Cucsat.G7817.T5 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2072.53e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1[more]
A0A0A0LT501.17e-1386.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1[more]
A0A5D3CDY91.21e-1386.36Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7VI891.21e-1386.36Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3C2S31.21e-1386.36transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..82
NoneNo IPR availablePANTHERPTHR33873:SF1TRANSCRIPTION FACTOR VOZ1coord: 65..105
IPR039277Transcription factor VOZ1/VOZ2PANTHERPTHR33873TRANSCRIPTION FACTOR VOZ1coord: 65..105

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G7817Cucsat.G7817gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G7817.T5.E1Cucsat.G7817.T5.E1exon
Cucsat.G7817.T5.E2Cucsat.G7817.T5.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G7817.T5.C1Cucsat.G7817.T5.C1CDS
Cucsat.G7817.T5.C2Cucsat.G7817.T5.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G7817.T5Cucsat.G7817.T5-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048578 positive regulation of long-day photoperiodism, flowering
biological_process GO:0006355 regulation of transcription, DNA-templated