Cucsat.G7817 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7817
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	vascular plant one zinc finger protein
Location	ctg1556: 1623720 .. 1625899 (+)
RNA-Seq Expression	Cucsat.G7817
Synteny	Cucsat.G7817

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAACCATTCATGTTCTTCTCCTTCTACTCTGGTGCATATCATCGGTCGTCTGATGCCGTTCGTGGGTGACCTAAAAGATCTGAACTAAGAGCCAAAGCTACACTGATTACTTCTCTAAGGAAAAAACTACCCCCTAATCTTCTTCCTCCAAGTTTTCCCATGATTTTCGACCCAAATAGTATGCAATTTGGCGGTTAACTGTTCTTTGTTTATTCCAGTTCTTTTCTTTTCTTTAAATACGTGAATTAGGGTTGAATTAAGCGACCGCTTACTTAGTCGAATCTTTGATGATGGCACGTAGAGATCACGATGAATTAGTACATGATAGAAAAACACGTTTAAGATTTTGCCAAAATTTTAAGTAGAGAGCTAGGTAAGGATGAATTAGCTTAGGTGAAACTTTGTGATCATCTTATGATTGGTACAATGGTTACAATTTTACTTGTTTCCAATTCAGTCTCCTATTTTCTGAACTGAGTTAGAGGAAGTGGATGAATATTCAACAGTAGCATTACAAATGTATTTGTTTCGATAGCCCATATGATTTTTTTTCCTTTTGGGTAGGTTCTGTTTTGCAATCTGAACGGACTTTATATAAAGGGTCGGTGCTTCATTGTGATTTCTTTTTCTTCAGTTGCTGCTAAAATAATTTTGGTGGAAGGAAAGAGACGAATGGATGTCGAAGGGTTTGAAGAGTAAATGTCAATCTACTTCTCATCAGCTTTTGAAGGAAAGAGCAAAGAATTGTGTTAATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCATTTGTCGTAAGTTTTTTTTTTCAACTTTCTTTCCCCTTTGCCAAGGATGGTTTTGTCTTCCATCACTTTTGTGTAATCTAAATGTCTGTAAACATTCAATCAGTAGTGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCATCTTCTTGGGCATTGTGATGAGCAAGATGATGCAACTAGTACATTTGTTGAACCAAAGGCTAAACCTGAACTCCGTTGCATGCGTTCTTGGTAGCAATCCGTTAAATTTTGTACAAGTAGGCTTTTTCTTCATTTTCTTTTTTAGTCTAACTCCATCTTTCAACGGGTGAATAATGTGTTCACTAGCCTTCCTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGTATTGCCAATTAAAAACAATGCACAAAGCTTCTTAACCATTTAACAAAGTTCTATTAATTGCACTTGAGACATAATCTTGTAGTGTTTTCTATTTTATGTCATTTGCTGGAAACTGGCTGGTTTCTCTTGGGATCCATGTCTACAAGCCCAACTTCTTAAAACATGTGACTTTTTCTATTGGATTAGTTGTTGTTTGCCTCTTATTTGTGATGACAGTATCTGCATAACAGTTGTGAGAATTGAGGCTTATCAATTAATCCAGCCTGATTTTTTTATTTTTTTTGTCATTATGGTATATGTGCTTCTATTGTTGTTGTTTGTGATTTTCTGATATTACATTTCTTGATGAGGAGACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAGAAACACAACCTTTGGGTTGACTACATTTTATCCATATTCCATGAACTAGAAAAGTAATTTGCACAACAATTGGTGGATTGATGAATTCAGTGGCTCGTTATGTTGTTTTACCACATGAAAATGGTCATTGTAGTTTTACTATTCGATTGAGTAACATATTAGTGGGGAAAGGAATTGTAAGCTTTAATATTTAATATTACAATATATCTACATTAGGTGTACATATAACCATCTTCCACCAGTAGTTTCTAATAATCCATAGCACTAAATAATTTTTAGTTTTTCTTTTATACTTTCAATGGAATAAAATTATAAGGCACATTATTC

Coding sequence (CDS)

ATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCATTTGTCACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTACATGGATCCACAAGCATCAATCGGTGTTTTAGCCATCTGCATTATTTCCATATCATAG

Protein sequence

MTLKGYSLIFKMQGRRVVLLTLLSWRSESIICSGSGMLSLMNLHLHLHLSQSGKNSTSTSLDGPFKSDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYMDPQASIGVLAICIISIS

Homology

[Close]

BLAST of Cucsat.G7817 vs. ExPASy Swiss-Prot
Match: Q9SGQ0 (Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-18
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 3  KGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLREWN 62
          K  K+ C+S SH+L K++AKN V+DL+G+  +LQ ARKESR TD+T+LEE+V+ MLREW 
Sbjct: 4  KRSKTNCRSASHKLFKDKAKNRVDDLQGMLLDLQFARKESRPTDVTLLEEQVNQMLREWK 63

Query: 63 VELNEPSPASS 74
           ELNEPSPASS
Sbjct: 64 SELNEPSPASS 74

[Close]

BLAST of Cucsat.G7817 vs. ExPASy Swiss-Prot
Match: Q9SLB9 (Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-05
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 11 STSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLREWNVELNEPSP 70
          +++HQ ++E+    + +L+  F +LQ ARKE R  D+ +LE ++   +REW  EL  PSP
Sbjct: 8  TSAHQNVEEK----LRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSP 67

Query: 71 ASSFV---VSFFFQLSFPFAK 89
           SS +   +S F +   P  K
Sbjct: 68 ESSLLGEGISQFLEEFAPLLK 84

[Close]

BLAST of Cucsat.G7817 vs. NCBI nr
Match: KAE8649646.1 (hypothetical protein Csa_012462 [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 1.94e-45
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE
Sbjct: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WNVELNEPSPASSFV
Sbjct: 61 WNVELNEPSPASSFV 75

[Close]

BLAST of Cucsat.G7817 vs. NCBI nr
Match: XP_038902747.1 (transcription factor VOZ1-like [Benincasa hispida] >XP_038902748.1 transcription factor VOZ1-like [Benincasa hispida])

HSP 1 Score: 133 bits (334), Expect = 2.78e-34
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKCQSTSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTD+ +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSPASSFV
Sbjct: 61 WNAELNEPSPASSFV 75

[Close]

BLAST of Cucsat.G7817 vs. NCBI nr
Match: XP_011649982.2 (transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor VOZ1 [Cucumis sativus] >XP_031736625.1 transcription factor VOZ1 [Cucumis sativus] >XP_031736626.1 transcription factor VOZ1 [Cucumis sativus] >KAE8652275.1 hypothetical protein Csa_021797 [Cucumis sativus])

HSP 1 Score: 130 bits (328), Expect = 1.57e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKCQSTSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTD+ +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSPASS V
Sbjct: 61 WNAELNEPSPASSLV 75

[Close]

BLAST of Cucsat.G7817 vs. NCBI nr
Match: KAG6570910.1 (Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (327), Expect = 2.84e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKC STSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTDI +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSP+SSFV
Sbjct: 61 WNAELNEPSPSSSFV 75

[Close]

BLAST of Cucsat.G7817 vs. NCBI nr
Match: XP_022944126.1 (transcription factor VOZ1-like [Cucurbita moschata] >XP_022944127.1 transcription factor VOZ1-like [Cucurbita moschata])

HSP 1 Score: 130 bits (327), Expect = 2.84e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKC STSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTDI +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSP+SSFV
Sbjct: 61 WNAELNEPSPSSSFV 75

[Close]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL
Match: A0A0A0KYP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410810 PE=4 SV=1)

HSP 1 Score: 200 bits (508), Expect = 6.47e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE
Sbjct: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60

Query: 61 WNVELNEPSPASSFVVSFFFQLSFPFAKDGFVFHHFCVI 99
          WNVELNEPSPASSFVVSFFFQLSFPFAKDGFVFHHFCVI
Sbjct: 61 WNVELNEPSPASSFVVSFFFQLSFPFAKDGFVFHHFCVI 99

[Close]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL
Match: A0A0A0LT50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 5.54e-34
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKCQSTSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTD+ +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCQSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDVAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSPASS V
Sbjct: 61 WNAELNEPSPASSLV 75

[Close]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL
Match: A0A6J1JAR5 (transcription factor VOZ1-like OS=Cucurbita maxima OX=3661 GN=LOC111484090 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.38e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKC STSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTDI +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSP+SSFV
Sbjct: 61 WNAELNEPSPSSSFV 75

[Close]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL
Match: A0A6J1FTK4 (transcription factor VOZ1-like OS=Cucurbita moschata OX=3662 GN=LOC111448675 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.38e-33
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M KGLKSKC STSHQLLKE+AKN VNDL+GIFTNLQNARKESRTTDI +LEE+VH MLRE
Sbjct: 1  MPKGLKSKCHSTSHQLLKEKAKNRVNDLQGIFTNLQNARKESRTTDIAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSP+SSFV
Sbjct: 61 WNAELNEPSPSSSFV 75

[Close]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL
Match: A0A6J1I7D7 (transcription factor VOZ1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469812 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 3.30e-33
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MSKGLKSKCQSTSHQLLKERAKNCVNDLKGIFTNLQNARKESRTTDITILEERVHHMLRE 60
          M +GLKS CQSTSHQLLKE+AKN VNDL+GIFTNLQ+ARKESRTTD+ +LEE+VH MLRE
Sbjct: 1  MPRGLKSNCQSTSHQLLKEKAKNRVNDLQGIFTNLQSARKESRTTDVAVLEEQVHQMLRE 60

Query: 61 WNVELNEPSPASSFV 75
          WN ELNEPSPASSFV
Sbjct: 61 WNAELNEPSPASSFV 75

The following BLAST results are available for this feature:

BLAST of Cucsat.G7817 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGQ0	1.8e-18	63.38	Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1	[more]
Q9SLB9	2.2e-05	35.80	Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2	[more]

BLAST of Cucsat.G7817 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649646.1	1.94e-45	100.00	hypothetical protein Csa_012462 [Cucumis sativus]	[more]
XP_038902747.1	2.78e-34	86.67	transcription factor VOZ1-like [Benincasa hispida] >XP_038902748.1 transcription...	[more]
XP_011649982.2	1.57e-33	85.33	transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor...	[more]
KAG6570910.1	2.84e-33	85.33	Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022944126.1	2.84e-33	85.33	transcription factor VOZ1-like [Cucurbita moschata] >XP_022944127.1 transcriptio...	[more]

BLAST of Cucsat.G7817 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYP5	6.47e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410810 PE=4 SV=1	[more]
A0A0A0LT50	5.54e-34	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1	[more]
A0A6J1JAR5	1.38e-33	85.33	transcription factor VOZ1-like OS=Cucurbita maxima OX=3661 GN=LOC111484090 PE=4 ...	[more]
A0A6J1FTK4	1.38e-33	85.33	transcription factor VOZ1-like OS=Cucurbita moschata OX=3662 GN=LOC111448675 PE=...	[more]
A0A6J1I7D7	3.30e-33	82.67	transcription factor VOZ1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..82
None	No IPR available	PANTHER	PTHR33873:SF1	TRANSCRIPTION FACTOR VOZ1	coord: 65..105
IPR039277	Transcription factor VOZ1/VOZ2	PANTHER	PTHR33873	TRANSCRIPTION FACTOR VOZ1	coord: 65..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7817.T5	Cucsat.G7817.T5	mRNA
Cucsat.G7817.T3	Cucsat.G7817.T3	mRNA
Cucsat.G7817.T4	Cucsat.G7817.T4	mRNA
Cucsat.G7817.T6	Cucsat.G7817.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated