Cucsat.G5884.T1 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAGAGAAGAATAATGGGGGGTTATATGCAAATAAGCCAAATTAGGGATTTCATTCGCTAGGTCACCTTCTGTTTCCCCTTCATATAAAAGGATCACTACCACTCATTCATAAACCCTAATTCAGCCGACGAGCTCTCCGATTCTCTCCGATTCGCTCGTCCATCTCATACACTACAACCATGGTGACCTAATCTCTCACCCCTTTCTTTCGATCCTTCGTTCTCCTCTAGTATTCTGCTTAACAATTTCTCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGTACCTAGGGTTCTTTCCCCCCCTATTTTGATGTTCCGTCTATTTGCATCTCAATGTATAACCATCATCGAATTAAGACGCGAGTAATTCGCATCCTGGGTTTTACTTTTCCTGTTGTGTTGTTGGTATTCTGGGTTGATTTCGTCTCGTATTTGCAATTACCGGTTGAACTATCGTTTGGTATAGAATATCTAATTATGTGGTTTCTTCTTGGGGTGGATAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTTCTTGAGTGTATTTTTCCTTTATGTTCCAATGTTGCAAGTTTTGAGTGATTTTTTGTATGATTGTTTTTTGATACAGAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTCATTAATTTTCCTAGATTGATATGACTATTTATATGAGCTCGTGTATGATTAGTCTTTCTAGCTTTTGCCAATGGATGATTAGCTTCTCATTAGCAATTTTTGTGTGATTTGGTTGCTAAGAATGGAGTCTTTATGTAAATATTGCCATTCCTCACTGTTGTATGGCCGTATCGTAAGCCTATTGATACGTGTTTAGTGCTGACCCTTTAACATATCTTCACAAAGCTTACTTTTTTCTATTTATCCATTTTTGTTAATGTTAATCATGATGTGTGTAATGACTGTTGTCATGTTGCTGGGTTAATGCACATTCTTTGCCCTTGTTTTTTAACAAGTCTCACAATTTCAAAATTGAAGGTTGCTAATTCTGTTTACTTTGGTGTTTAATGGAACATGAGGCAACGTTTTGCTGTTTTGTTAGTATTTACGTTGAAATTCATGGTTTTGTTGCTGCTCACTCAATTTTAAATCTACTTATATTGTTTTATTTTTTTATTTGCAAATACAAATACGCTTCTGTTGTTGGTGCTTGTTTAATTAGTTGAATTATGTCCATGTTTTTCCTCAGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGAAAGAACGCTTTATATGCTATTTAATTTTCTCGTGGTTTCTCAGATTTTGTGGACTTCAATTTTATTTAGGATTCTTCACTATATTTTGAGGGCTTTGTTTTGAGTATCGAATTATGCTGTACTTGTGAAATCTGATCAATTTTTGATTTAATAGGTTCTCTACTTGAATATTTTATTGTTTTTTGTCATGAGATCTGTTCTATCGATCTTGTTTCATTTAATCTCCTTTACTTTTTAGTCAACAATTCAGGCCATTCTGAAGAGTTTGTTAGTTCTATTATTAGAAAGTAGAGGAAAAAACACGGTTGTCCTAGTAATGTACAATGTTTGTGGTGGTAGCTTTACTTTAAATATTCGCCCTAATTTTAAGCAAATGCAGCTGGCCATGTTGGGATTCTCGTGAGATGTTCTTGCGATTTGTAACTTTGTTCTTCTTCTTTTCGTAATAGTGCCGAAGGTTAGAAATATGAAGTGTTTTCGGGAGGAGCTTTACACTAATTATCAACGATAATAAGAGATTAATTGACAACAATTCCCCCATGCCATTGCCATCCA ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRVGAGGAPPRA Homology
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 3.8e-53 Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2) HSP 1 Score: 206.8 bits (525), Expect = 1.4e-52 Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2) HSP 1 Score: 206.1 bits (523), Expect = 2.4e-52 Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2) HSP 1 Score: 190.3 bits (482), Expect = 1.4e-47 Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 1.7e-37 Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus]) HSP 1 Score: 265 bits (678), Expect = 1.42e-89 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa]) HSP 1 Score: 261 bits (668), Expect = 4.78e-88 Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida]) HSP 1 Score: 258 bits (660), Expect = 7.94e-87 Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 253 bits (646), Expect = 1.12e-84 Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia]) HSP 1 Score: 250 bits (639), Expect = 1.23e-83 Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1) HSP 1 Score: 265 bits (678), Expect = 6.90e-90 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1) HSP 1 Score: 261 bits (668), Expect = 2.31e-88 Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A1S3C4P8 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1) HSP 1 Score: 261 bits (668), Expect = 2.31e-88 Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1) HSP 1 Score: 253 bits (646), Expect = 5.43e-85 Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1) HSP 1 Score: 253 bits (646), Expect = 5.43e-85 Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 208.8 bits (530), Expect = 2.7e-54 Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53 Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein ) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53 Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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