Cucsat.G5884 (gene) Cucumber (B10) v3

Overview
NameCucsat.G5884
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description40S ribosomal protein S26
Locationctg1402: 1557592 .. 1559012 (-)
RNA-Seq ExpressionCucsat.G5884
SyntenyCucsat.G5884
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAGAAGAATAATGGGGGGTTATATGCAAATAAGCCAAATTAGGGATTTCATTCGCTAGGTCACCTTCTGTTTCCCCTTCATATAAAAGGATCACTACCACTCATTCATAAACCCTAATTCAGCCGACGAGCTCTCCGATTCTCTCCGATTCGCTCGTCCATCTCATACACTACAACCATGGTGACCTAATCTCTCACCCCTTTCTTTCGATCCTTCGTTCTCCTCTAGTATTCTGCTTAACAATTTCTCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGTACCTAGGGTTCTTTCCCCCCCTATTTTGATGTTCCGTCTATTTGCATCTCAATGTATAACCATCATCGAATTAAGACGCGAGTAATTCGCATCCTGGGTTTTACTTTTCCTGTTGTGTTGTTGGTATTCTGGGTTGATTTCGTCTCGTATTTGCAATTACCGGTTGAACTATCGTTTGGTATAGAATATCTAATTATGTGGTTTCTTCTTGGGGTGGATAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTTCTTGAGTGTATTTTTCCTTTATGTTCCAATGTTGCAAGTTTTGAGTGATTTTTTGTATGATTGTTTTTTGATACAGAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTCATTAATTTTCCTAGATTGATATGACTATTTATATGAGCTCGTGTATGATTAGTCTTTCTAGCTTTTGCCAATGGATGATTAGCTTCTCATTAGCAATTTTTGTGTGATTTGGTTGCTAAGAATGGAGTCTTTATGTAAATATTGCCATTCCTCACTGTTGTATGGCCGTATCGTAAGCCTATTGATACGTGTTTAGTGCTGACCCTTTAACATATCTTCACAAAGCTTACTTTTTTCTATTTATCCATTTTTGTTAATGTTAATCATGATGTGTGTAATGACTGTTGTCATGTTGCTGGGTTAATGCACATTCTTTGCCCTTGTTTTTTAACAAGTCTCACAATTTCAAAATTGAAGGTTGCTAATTCTGTTTACTTTGGTGTTTAATGGAACATGAGGCAACGTTTTGCTGTTTTGTTAGTATTTACGTTGAAATTCATGGTTTTGTTGCTGCTCACTCAATTTTAAATCTACTTATATTGTTTTATTTTTTTATTTGCAAATACAAATACGCTTCTGTTGTTGGTGCTTGTTTAATTAGTTGAATTATGTCCATGTTTTTCCTCAGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGAAAGAACGCTTTATATGCTATTTAATTTTCTCGTGGTTTCTCAGATTTTGTGGACTTCAATTTTATTTAGGATTCTTCACTATATTTTGAGGGCTTTGTTTTGAGTATCGAATTATGCTGTACTTGTGAAATCTGATCAATTTTTGATTTAATAGGTTCTCTACTTGAATATTTTATTGTTTTTTGTCATGAGATCTGTTCTATCGATCTTGTTTCATTTAATCTCCTTTACTTTTTAGTCAACAATTCAGGCCATTCTGAAGAGTTTGTTAGTTCTATTATTAGAAAGTAGAGGAAAAAACACGGTTGTCCTAGTAATGTACAATGTTTGTGGTGGTAGCTTTACTTTAAATATTCGCCCTAATTTTAAGCAAATGCAGCTGGCCATGTTGGGATTCTCGTGAGATGTTCTTGCGATTTGTAACTTTGTTCTTCTTCTTTTCGTAATAGTGCCGAAGGTTAGAAATATGAAGTGTTTTCGGGAGGAGCTTTACACTAATTATCAACGATAATAAGAGATTAATTGACAACAATTCCCCCATGCCATTGCCATCCA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRVGAGGAPPRA
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G5884 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5884 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5884 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G5884 vs.
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G5884.T1Cucsat.G5884.T1mRNA
Cucsat.G5884.T3Cucsat.G5884.T3mRNA
Cucsat.G5884.T8Cucsat.G5884.T8mRNA
Cucsat.G5884.T4Cucsat.G5884.T4mRNA
Cucsat.G5884.T6Cucsat.G5884.T6mRNA
Cucsat.G5884.T14Cucsat.G5884.T14mRNA
Cucsat.G5884.T5Cucsat.G5884.T5mRNA
Cucsat.G5884.T13Cucsat.G5884.T13mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome