Cucsat.G5884.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G5884.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	40S ribosomal protein S26
Location	ctg1402: 1556955 .. 1559085 (-)
RNA-Seq Expression	Cucsat.G5884.T3
Synteny	Cucsat.G5884.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGAAGAATAATGGGGGGTTATATGCAAATAAGCCAAATTAGGGATTTCATTCGCTAGGTCACCTTCTGTTTCCCCTTCATATAAAAGGATCACTACCACTCATTCATAAACCCTAATTCAGCCGACGAGCTCTCCGATTCTCTCCGATTCGCTCGTCCATCTCATACACTACAACCATGGTGACCTAATCTCTCACCCCTTTCTTTCGATCCTTCGTTCTCCTCTAGTATTCTGCTTAACAATTTCTCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGTACCTAGGGTTCTTTCCCCCCCTATTTTGATGTTCCGTCTATTTGCATCTCAATGTATAACCATCATCGAATTAAGACGCGAGTAATTCGCATCCTGGGTTTTACTTTTCCTGTTGTGTTGTTGGTATTCTGGGTTGATTTCGTCTCGTATTTGCAATTACCGGTTGAACTATCGTTTGGTATAGAATATCTAATTATGTGGTTTCTTCTTGGGGTGGATAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTTCTTGAGTGTATTTTTCCTTTATGTTCCAATGTTGCAAGTTTTGAGTGATTTTTTGTATGATTGTTTTTTGATACAGAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTCATTAATTTTCCTAGATTGATATGACTATTTATATGAGCTCGTGTATGATTAGTCTTTCTAGCTTTTGCCAATGGATGATTAGCTTCTCATTAGCAATTTTTGTGTGATTTGGTTGCTAAGAATGGAGTCTTTATGTAAATATTGCCATTCCTCACTGTTGTATGGCCGTATCGTAAGCCTATTGATACGTGTTTAGTGCTGACCCTTTAACATATCTTCACAAAGCTTACTTTTTTCTATTTATCCATTTTTGTTAATGTTAATCATGATGTGTGTAATGACTGTTGTCATGTTGCTGGGTTAATGCACATTCTTTGCCCTTGTTTTTTAACAAGTCTCACAATTTCAAAATTGAAGGTTGCTAATTCTGTTTACTTTGGTGTTTAATGGAACATGAGGCAACGTTTTGCTGTTTTGTTAGTATTTACGTTGAAATTCATGGTTTTGTTGCTGCTCACTCAATTTTAAATCTACTTATATTGTTTTATTTTTTTATTTGCAAATACAAATACGCTTCTGTTGTTGGTGCTTGTTTAATTAGTTGAATTATGTCCATGTTTTTCCTCAGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGAAAGAACGCTTTATATGCTATTTAATTTTCTCGTGGTTTCTCAGATTTTGTGGACTTCAATTTTATTTAGGATTCTTCACTATATTTTGAGGGCTTTGTTTTGAGTATCGAATTATGCTGTACTTGTGAAATCTGATCAATTTTTGATTTAATAGGTTCTCTACTTGAATATTTTATTGTTTTTTGTCATGAGATCTGTTCTATCGATCTTGTTTCATTTAATCTCCTTTACTTTTTAGTCAACAATTCAGGCCATTCTGAAGAGTTTGTTAGTTCTATTATTAGAAAGTAGAGGAAAAAACACGGTTGTCCTAGTAATGTACAATGTTTGTGGTGGTAGCTTTACTTTAAATATTCGCCCTAATTTTAAGCAAATGCAGCTGGCCATGTTGGGATTCTCGTGAGATGTTCTTGCGATTTGTAACTTTGTTCTTCTTCTTTTCGTAATAGTGCCGAAGGTTAGAAATATGAAGTGTTTTCGGGAGGAGCTTTACACTAATTATCAACGATAATAAGAGATTAATTGACAACAATTCCCCCATGCCATTGCCATCCA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTCATTAA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVYFESIYFSFLVLSFH

Homology

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.9e-47
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-46
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 3.2e-46
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRR 105
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-37
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRR 105
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF +R
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of Cucsat.G5884.T3 vs. NCBI nr
Match: KAG7033266.1 (40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219 bits (558), Expect = 9.43e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Cucsat.G5884.T3 vs. NCBI nr
Match: KEH35566.1 (40S ribosomal S26-like protein [Medicago truncatula])

HSP 1 Score: 219 bits (559), Expect = 1.04e-71
Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVYFESIYFSFLV 117
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRV      F F V
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVILLLSLFIFAV 117

[Close]

BLAST of Cucsat.G5884.T3 vs. NCBI nr
Match: RZC07512.1 (40S ribosomal protein S26-3 isoform A [Glycine soja])

HSP 1 Score: 220 bits (560), Expect = 1.09e-71
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY 107
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY 107

[Close]

BLAST of Cucsat.G5884.T3 vs. NCBI nr
Match: KEH28477.1 (40S ribosomal S26-like protein [Medicago truncatula])

HSP 1 Score: 219 bits (558), Expect = 1.87e-71
Identity = 109/122 (89.34%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY---FESIYFSFLV 119
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRV    F S  F  L+
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRVINYLFTSFNFYVLL 120

[Close]

BLAST of Cucsat.G5884.T3 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus])

HSP 1 Score: 219 bits (558), Expect = 2.06e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL
Match: A0A072V1J5 (40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=25489846 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 5.06e-72
Identity = 108/117 (92.31%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVYFESIYFSFLV 117
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRV      F F V
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVILLLSLFIFAV 117

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL
Match: A0A445K9M3 (40S ribosomal protein S26 OS=Glycine soja OX=3848 GN=D0Y65_014690 PE=3 SV=1)

HSP 1 Score: 220 bits (560), Expect = 5.28e-72
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY 107
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY 107

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL
Match: A0A072UFL4 (40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=3 SV=1)

HSP 1 Score: 219 bits (558), Expect = 9.04e-72
Identity = 109/122 (89.34%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRVY---FESIYFSFLV 119
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRV    F S  F  L+
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRVINYLFTSFNFYVLL 120

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1)

HSP 1 Score: 219 bits (558), Expect = 9.98e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 219 bits (558), Expect = 1.07e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 105

[Close]

BLAST of Cucsat.G5884.T3 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.1e-48
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Cucsat.G5884.T3 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-48
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of Cucsat.G5884.T3 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-48
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRR 106
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of Cucsat.G5884.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	2.9e-47	86.67	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	1.1e-46	85.71	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.1e-46	85.71	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	3.2e-46	82.69	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	3.5e-37	71.15	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Cucsat.G5884.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033266.1	9.43e-72	100.00	40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KEH35566.1	1.04e-71	92.31	40S ribosomal S26-like protein [Medicago truncatula]	[more]
RZC07512.1	1.09e-71	98.13	40S ribosomal protein S26-3 isoform A [Glycine soja]	[more]
KEH28477.1	1.87e-71	89.34	40S ribosomal S26-like protein [Medicago truncatula]	[more]
XP_004138397.1	2.06e-71	100.00	40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein C...	[more]

BLAST of Cucsat.G5884.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072V1J5	5.06e-72	92.31	40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=25489846 PE=3 SV=1	[more]
A0A445K9M3	5.28e-72	98.13	40S ribosomal protein S26 OS=Glycine soja OX=3848 GN=D0Y65_014690 PE=3 SV=1	[more]
A0A072UFL4	9.04e-72	89.34	40S ribosomal protein S26 OS=Medicago truncatula OX=3880 GN=11430222 PE=3 SV=1	[more]
A0A0A0KDG9	9.98e-72	100.00	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1	[more]
A0A6J1JRW7	1.07e-71	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1	[more]

BLAST of Cucsat.G5884.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	2.1e-48	86.67	Ribosomal protein S26e family protein	[more]
AT2G40510.1	7.8e-48	85.71	Ribosomal protein S26e family protein	[more]
AT2G40590.1	7.8e-48	85.71	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..104 e-value: 2.9E-54 score: 182.1
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..105
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..109 e-value: 4.3E-57 score: 193.5
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 1..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G5884	Cucsat.G5884	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5884.T3.E1	Cucsat.G5884.T3.E1	exon
Cucsat.G5884.T3.E2	Cucsat.G5884.T3.E2	exon
Cucsat.G5884.T3.E3	Cucsat.G5884.T3.E3	exon
Cucsat.G5884.T3.E4	Cucsat.G5884.T3.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5884.T3.C4	Cucsat.G5884.T3.C4	CDS
Cucsat.G5884.T3.C3	Cucsat.G5884.T3.C3	CDS
Cucsat.G5884.T3.C2	Cucsat.G5884.T3.C2	CDS
Cucsat.G5884.T3.C1	Cucsat.G5884.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5884.T3	Cucsat.G5884.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding