Cucsat.G5884.T1 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G5884.T1
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description40S ribosomal protein S26
Locationctg1402: 1556955 .. 1559087 (-)
RNA-Seq ExpressionCucsat.G5884.T1
SyntenyCucsat.G5884.T1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAGAAGAATAATGGGGGGTTATATGCAAATAAGCCAAATTAGGGATTTCATTCGCTAGGTCACCTTCTGTTTCCCCTTCATATAAAAGGATCACTACCACTCATTCATAAACCCTAATTCAGCCGACGAGCTCTCCGATTCTCTCCGATTCGCTCGTCCATCTCATACACTACAACCATGGTGACCTAATCTCTCACCCCTTTCTTTCGATCCTTCGTTCTCCTCTAGTATTCTGCTTAACAATTTCTCTTTTGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGTACCTAGGGTTCTTTCCCCCCCTATTTTGATGTTCCGTCTATTTGCATCTCAATGTATAACCATCATCGAATTAAGACGCGAGTAATTCGCATCCTGGGTTTTACTTTTCCTGTTGTGTTGTTGGTATTCTGGGTTGATTTCGTCTCGTATTTGCAATTACCGGTTGAACTATCGTTTGGTATAGAATATCTAATTATGTGGTTTCTTCTTGGGGTGGATAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTTCTTGAGTGTATTTTTCCTTTATGTTCCAATGTTGCAAGTTTTGAGTGATTTTTTGTATGATTGTTTTTTGATACAGAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGTATATTTTGAATCTATTTACTTTTCTTTCTTGGTTCTTTCGTTTCATTAATTTTCCTAGATTGATATGACTATTTATATGAGCTCGTGTATGATTAGTCTTTCTAGCTTTTGCCAATGGATGATTAGCTTCTCATTAGCAATTTTTGTGTGATTTGGTTGCTAAGAATGGAGTCTTTATGTAAATATTGCCATTCCTCACTGTTGTATGGCCGTATCGTAAGCCTATTGATACGTGTTTAGTGCTGACCCTTTAACATATCTTCACAAAGCTTACTTTTTTCTATTTATCCATTTTTGTTAATGTTAATCATGATGTGTGTAATGACTGTTGTCATGTTGCTGGGTTAATGCACATTCTTTGCCCTTGTTTTTTAACAAGTCTCACAATTTCAAAATTGAAGGTTGCTAATTCTGTTTACTTTGGTGTTTAATGGAACATGAGGCAACGTTTTGCTGTTTTGTTAGTATTTACGTTGAAATTCATGGTTTTGTTGCTGCTCACTCAATTTTAAATCTACTTATATTGTTTTATTTTTTTATTTGCAAATACAAATACGCTTCTGTTGTTGGTGCTTGTTTAATTAGTTGAATTATGTCCATGTTTTTCCTCAGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGAAAGAACGCTTTATATGCTATTTAATTTTCTCGTGGTTTCTCAGATTTTGTGGACTTCAATTTTATTTAGGATTCTTCACTATATTTTGAGGGCTTTGTTTTGAGTATCGAATTATGCTGTACTTGTGAAATCTGATCAATTTTTGATTTAATAGGTTCTCTACTTGAATATTTTATTGTTTTTTGTCATGAGATCTGTTCTATCGATCTTGTTTCATTTAATCTCCTTTACTTTTTAGTCAACAATTCAGGCCATTCTGAAGAGTTTGTTAGTTCTATTATTAGAAAGTAGAGGAAAAAACACGGTTGTCCTAGTAATGTACAATGTTTGTGGTGGTAGCTTTACTTTAAATATTCGCCCTAATTTTAAGCAAATGCAGCTGGCCATGTTGGGATTCTCGTGAGATGTTCTTGCGATTTGTAACTTTGTTCTTCTTCTTTTCGTAATAGTGCCGAAGGTTAGAAATATGAAGTGTTTTCGGGAGGAGCTTTACACTAATTATCAACGATAATAAGAGATTAATTGACAACAATTCCCCCATGCCATTGCCATCCA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGTGGCCACGTGAAATTCATCCGTTGTTCCAACTGCGGCAAATGCTGCCCTAAGGATAAGGCAATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAACGTGAGCCCCCACAGCGCTTCATTAGACGCAGGGACGATGCACCAAAGCCTGGACAGGCAGGACAGAACCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRVGAGGAPPRA
Homology
[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.8e-53
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP Q GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-52
Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 2.4e-52
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 1.4e-47
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR D    P   G  P  
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRREDRPQGPRPGGGAPAP 120

Query: 121 GAGGAP 127
           G   AP
Sbjct: 121 GGAAAP 126

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-37
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF  +R  A +PG  G  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_004138397.1 (40S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein Csa_005395 [Cucumis sativus])

HSP 1 Score: 265 bits (678), Expect = 1.42e-89
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 261 bits (668), Expect = 4.78e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 258 bits (660), Expect = 7.94e-87
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (646), Expect = 1.12e-84
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 250 bits (639), Expect = 1.23e-83
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGGAP 126
           GAG AP
Sbjct: 121 GAGTAP 126

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A0A0KDG9 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1)

HSP 1 Score: 265 bits (678), Expect = 6.90e-90
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 2.31e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A1S3C4P8 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 2.31e-88
Identity = 127/129 (98.45%), Postives = 127/129 (98.45%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQNPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 129
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 253 bits (646), Expect = 5.43e-85
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 253 bits (646), Expect = 5.43e-85
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+DAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAG-GAPPRA 129
           GAG GAPPRA
Sbjct: 121 GAGPGAPPRA 130

[Close]
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.7e-54
Identity = 108/131 (82.44%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP Q GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-53
Identity = 102/125 (81.60%), Postives = 108/125 (86.40%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-53
Identity = 103/129 (79.84%), Postives = 109/129 (84.50%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQ GQ PR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

The following BLAST results are available for this feature:
BLAST of Cucsat.G5884.T1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYK93.8e-5382.4440S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1[more]
P492061.4e-5281.6040S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2[more]
Q8LPJ72.4e-5279.8440S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2[more]
P492161.4e-4773.8140S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2... [more]
O454991.7e-3766.9540S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1[more]
BLAST of Cucsat.G5884.T1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138397.11.42e-89100.0040S ribosomal protein S26-3 [Cucumis sativus] >KGN45831.1 hypothetical protein C... [more]
XP_008456772.14.78e-8898.45PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S rib... [more]
XP_038884330.17.94e-8797.6740S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom... [more]
XP_022939944.11.12e-8496.1540S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso... [more]
XP_022134511.11.23e-8396.8340S ribosomal protein S26-1-like [Momordica charantia][more]
BLAST of Cucsat.G5884.T1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDG96.90e-90100.0040S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_6G014520 PE=3 SV=1[more]
A0A5A7UA012.31e-8898.4540S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C4P82.31e-8898.4540S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1[more]
A0A6J1K0V75.43e-8596.1540S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1[more]
A0A6J1FIL85.43e-8596.1540S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=... [more]
BLAST of Cucsat.G5884.T1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56340.12.7e-5482.44Ribosomal protein S26e family protein [more]
AT2G40590.11.0e-5381.60Ribosomal protein S26e family protein [more]
AT2G40510.11.7e-5379.84Ribosomal protein S26e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 1..106
e-value: 1.2E-54
score: 183.3
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 1..128
IPR000892Ribosomal protein S26ePROSITEPS00733RIBOSOMAL_S26Ecoord: 73..80
IPR038551Ribosomal protein S26e superfamilyGENE3D3.30.1740.20Ribosomal protein S26ecoord: 1..115
e-value: 1.1E-58
score: 198.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..129
NoneNo IPR availablePANTHERPTHR12538:SF1640S RIBOSOMAL PROTEIN S26coord: 1..128

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G5884Cucsat.G5884gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5884.T1.E1Cucsat.G5884.T1.E1exon
Cucsat.G5884.T1.E2Cucsat.G5884.T1.E2exon
Cucsat.G5884.T1.E3Cucsat.G5884.T1.E3exon
Cucsat.G5884.T1.E4Cucsat.G5884.T1.E4exon
Cucsat.G5884.T1.E5Cucsat.G5884.T1.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5884.T1.C5Cucsat.G5884.T1.C5CDS
Cucsat.G5884.T1.C4Cucsat.G5884.T1.C4CDS
Cucsat.G5884.T1.C3Cucsat.G5884.T1.C3CDS
Cucsat.G5884.T1.C2Cucsat.G5884.T1.C2CDS
Cucsat.G5884.T1.C1Cucsat.G5884.T1.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G5884.T1Cucsat.G5884.T1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003729 mRNA binding