Cucsat.G2492.T1 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GAATGAGGAGGAGAGGGAAAAAAAATAAAAAAAAAAAAGAAAGAAAGAAAGAAAGGAACAAAAGCAGCTTGAATGGGGCCCATAAAATGTCCTCTCAAAAGACCCCCAGATGTGATTTTAATCTTTCTTCTACTGCACTAACATAATTAATTTTCGATTTTATGATTTCCATTTTTTTTTTTATCAAAAAAATAATAAAAATAAAATTGGGGTTGTCGTTTCGATCTTATTTGGTCGCCAAATCTTCCCCAAAATTCTCTCTTCCATAATCATGTTAGGCGAGAGAGCAATCTGTGAAGGGTCGTCATCTGGATTGGCCATCACCGCCGATCAACAGCAGCAACAACAACAGGCAGGTCAGGCACAGGCGGGTACGGGTGCGGGTGTTCCTTTGAGCCGTTACGAATCACAAAAGCGGCGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCCGTATCGCTATCTCACTGTAACTGTAACCATGTACTTGAATTCCTTCGATACCTTGACCAATTTGGTAAAACAAGAGTTCATTCACATGGTTGTGTGTTCTTCGGTCAGCCTGACCCTCCTGCTCCCTGCCCTTGCCCTTTGAAACAAGCTTGGGGTAGCCTTGACGCACTCATCGGCCGCCTCCGCGCAGCCTACGAGGAGCACGGTGGCTCCCCTGAAGGAAACCCTTTTGGAAATGGAGCAATTAGAACGTATTTAAGAGAGGTGAAGGAGAGCCAAGCCAAGGCCAGAGGAATCCCCTACAAAAAGAAGAAGAAGAAGAGAAATAATCAGATGATGATGATGAATAATACGAACAAGCAGCAGCAGCTGCTGCAGCAACTCCCCAATGATAATAATGATACCAACGCTCCTTTGACTCACATCCCTTGATTTTTCAATCCATTTCCATGGTAATTAATTACAATCCCTTCCTTTTTATTCTTCTATATATTATTATTTTTCGCTTCTTCGAAAATTATATATATTACTGTTTTTGTTGGATTTTGAATTTGGAATTATATGAGAGTAGTAAGTTCGTGAGTGAATTATATTTTTATATATTAAGGAGATGGGTTGATTATTGGAGAATTATGATGACTGATATTAATTCATGATCAACATCATTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTAGACCAAGTTTTCACAAAACCCTAATTTTGATCGTAGTTACACCATTTAGAAAATGTATGAATTATGAGAAATAATTGTGTGTTAAGATTAAGAAGAGATGATATATATTGGTATGTAGATGGTTTTAATTTGAGTGTGAAGAATCAGAAAAATAGCTTTGATTGGTGTGCCATTCAGTGTCTGGAAAAACCACTGTTTGGTTTGATGTCCCTTAGTTTAATAAAATAAAATAAAATAATTAAAATAGGTAACCAAAAATGTTTTACTTTTCAATAGATTTGGGCCTTTTTCGATTCTATACGATTTTTTTGCTCCCCATGCATGGACATTCCCATATCCCACCATCTCTATATCATCACCATCATCATCATCTTTTTAATATTTCTTTATATATCATTATCAAAATTATTTTCAATTTTACTATTTCTTTTTTATAATTGTTGTTTTCCTACTCTCTTACTTCTTTCCTTCGGTACTTGTTGAATTTTATCCTATTTCTTCCTTATATTACTCCTTATATCAATTAATACCATTATATAATGTCTCAACCCCTTCTAAACTTTTCATTTCTTTTCTTATTTTATCTCTTCAAACAAGCATTCATCACTGTCATATGCTTGTTATCTAATGGACTATATATTGATATTAATTGACATTTTCTTTTTAAAAAATCATATTAACAGAGATATACACATACTGTATTTACTGTTATAAAATTTTAGAACATATTGAGGACATTTTCAAACATATCAACAAATTAAAACTAATGCACATTTTAGTTTTTTTTTTTTTTTTTTTTGCCATATAAAAAAATGCATAGATATAAAACTAGATCTTATGTATTGGAAAATTATATTGAATTGATTTTGTTCACCCTCTCTCTTGTTTGGATTTCTTATACAAAACTGTAAACAGTTTGCCGAAATTTTGGTAGTTCCAAAATATTCGATAGTATTTTTATGACAAAGTTATAATTTATATTACTGTTCTCTATATGTAAATGATCTTAATAGAGATATGGAAGAAAAGTTTATCATGTTAACTCATTTCCAATTTTTTGAAGAAAAGAAAATGTATTGACGTTTAAAAATTATATAGGGATTTTTTTTGGTAATTATATACTGAATTAGTAGGACAGGTCCAAGTTGATTTACGTACAAAATTTAATTAGACTGTTTGAGTTTACTCTAATTAATTACTGGTGTACTTTCTCACTAATCTTCAAATTTCAAATGAAATTAATTAAATTTCTATTTATAGCTCTCCATTTATGTAGGTGGGAGTCCAAACTCCTCTACTATTTCTCTCCATTTGATGTATCCACTGGAATGAGGAGTCCAATGGAAATTCAAACATTTTTTTCATTTTCCCCCCATCTTCTTAGTTTGAATAAAATTGAAAGTATTTTGAAAACATATCTAAACTGTAGATTATATAATCTAGAATTTTCATGTAAATAAATTTGCAATATTAACTCAAAAGTCCCTCTTTTAAAATGTCATTTATGTTTTTGGATTTGATTTATCAATCGTGGGGTTTGTTTCTGATTTTACTCTGCTTATAGCTTAAGAGAAGGAAATTAATCTTTTTATTCTTATACTATTTTCACATCTAACTAGTTCTTTTCTGTGTTTTAAGAACGTTATGTTTAATAATTAAGGTATATAACCTAATGGAGATTAACGAATAAAAATGTTAGAATATTACATACCCTTTCAAGATATCAAACAACATCAATATTCACCTACACCTAAACTTGTCCTTTGTTATATTTCTATATGATCTGAGTTTGAAAAGAATTATTTCTGATATATATAATAATGCGGCATACCGAGAATTTGACAAATCGTATAGTGTTATTGTATTAATATAATCTTTTTGCTGTCACATATCCACTAATAATATCAATACAAACTTATTTTGTTATTGTGTGTATCAAAATGGTATAAAATGGCCATTTGAAATTGCTTGCCACTTCACTTGGTTTTGTATTGCAATTATATTAAATGAAATAATTTGTCATCAATTCCCAATTGCTACTTAATATTTCCTTAATTAGTCAATGGAAGCACTATATCTTTATTGGGTAATGGCTAAACCTATTTAAGGTTATCATGTTAATTAGTGATGAATTTAAAGTCTGAATTGAAAATTTTCTTCTTCTTCTTCTTTGGCAGGAATTGAAGGAAGGAAGAGATGTGGATTTAATGGACTGATGGAAGGGGAAGAGAGATGGAGAATATTGGCGAAAATTAAAGAAACAAAAATGTGGATTATTGCTTTCTGAAATATACGGTGTTGGGAGTTGTGCAGAGGATTTAATTTATATGGGTAGCCTAGCTAGCTATAATTCTGGTTATGAATAATCTATAATATTGAGGCAGCATAATTATAATTAGATGGCCCTTATTAAATTCTATATATATATATATATATGTCGTAGCATTGTCATACAATCTTAGGCACCTTTTTTTCTATTAGGGTAAAGCAAACAATTTCTATTGTCTTTTACTGATTGAAAATTTCAATTTAGAAGAGAGAAAGAACATCATGATTTTATATATTGAGGTGTAAATATTAATATATAATTATAGGT ATGTTAGGCGAGAGAGCAATCTGTGAAGGGTCGTCATCTGGATTGGCCATCACCGCCGATCAACAGCAGCAACAACAACAGGCAGGTCAGGCACAGGCGGGTACGGGTGCGGGTGTTCCTTTGAGCCGTTACGAATCACAAAAGCGGCGAGATTGGAACACTTTTGGGCAATATCTAAAAAACCAAACACCCCCCGTATCGCTATCTCACTGTAACTGTAACCATGTACTTGAATTCCTTCGATACCTTGACCAATTTGGTAAAACAAGAGTTCATTCACATGGTTGTGTGTTCTTCGGTCAGCCTGACCCTCCTGCTCCCTGCCCTTGCCCTTTGAAACAAGCTTGGGGTAGCCTTGACGCACTCATCGGCCGCCTCCGCGCAGCCTACGAGGAGCACGGTGGCTCCCCTGAAGGAAACCCTTTTGGAAATGGAGCAATTAGAACGTATTTAAGAGAGGTGAAGGAGAGCCAAGCCAAGGCCAGAGGAATCCCCTACAAAAAGAAGAAGAAGAAGAGAAATAATCAGATGATGATGATGAATAATACGAACAAGCAGCAGCAGCTGCTGCAGCAACTCCCCAATGATAATAATGATACCAACGCTCCTTTGACTCACATCCCTTGA MLGERAICEGSSSGLAITADQQQQQQQAGQAQAGTGAGVPLSRYESQKRRDWNTFGQYLKNQTPPVSLSHCNCNHVLEFLRYLDQFGKTRVHSHGCVFFGQPDPPAPCPCPLKQAWGSLDALIGRLRAAYEEHGGSPEGNPFGNGAIRTYLREVKESQAKARGIPYKKKKKKRNNQMMMMNNTNKQQQLLQQLPNDNNDTNAPLTHIP Homology
BLAST of Cucsat.G2492.T1 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 3.4e-64 Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58 Identity = 105/146 (71.92%), Postives = 121/146 (82.88%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 1.6e-58 Identity = 105/146 (71.92%), Postives = 121/146 (82.88%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 2.8e-58 Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 4.8e-58 Identity = 107/150 (71.33%), Postives = 124/150 (82.67%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. NCBI nr
Match: KGN49306.1 (hypothetical protein Csa_004072 [Cucumis sativus]) HSP 1 Score: 426 bits (1096), Expect = 1.02e-150 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. NCBI nr
Match: KAA0052619.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK13209.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]) HSP 1 Score: 395 bits (1014), Expect = 3.03e-138 Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. NCBI nr
Match: XP_008465528.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]) HSP 1 Score: 389 bits (999), Expect = 6.76e-136 Identity = 198/214 (92.52%), Postives = 199/214 (92.99%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. NCBI nr
Match: XP_038881253.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]) HSP 1 Score: 361 bits (926), Expect = 7.06e-125 Identity = 186/212 (87.74%), Postives = 189/212 (89.15%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. NCBI nr
Match: XP_023003302.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003303.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023003304.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]) HSP 1 Score: 298 bits (763), Expect = 3.16e-100 Identity = 157/207 (75.85%), Postives = 164/207 (79.23%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy TrEMBL
Match: A0A0A0KNK5 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G519580 PE=3 SV=1) HSP 1 Score: 426 bits (1096), Expect = 4.94e-151 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy TrEMBL
Match: A0A5A7UGI5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008220 PE=3 SV=1) HSP 1 Score: 395 bits (1014), Expect = 1.47e-138 Identity = 200/209 (95.69%), Postives = 201/209 (96.17%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy TrEMBL
Match: A0A1S3CP28 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503153 PE=3 SV=1) HSP 1 Score: 389 bits (999), Expect = 3.27e-136 Identity = 198/214 (92.52%), Postives = 199/214 (92.99%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy TrEMBL
Match: A0A6J1KW42 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111496952 PE=3 SV=1) HSP 1 Score: 298 bits (763), Expect = 1.53e-100 Identity = 157/207 (75.85%), Postives = 164/207 (79.23%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. ExPASy TrEMBL
Match: A0A6J1EEZ4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433720 PE=3 SV=1) HSP 1 Score: 295 bits (755), Expect = 2.62e-99 Identity = 155/208 (74.52%), Postives = 162/208 (77.88%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 246.1 bits (627), Expect = 2.4e-65 Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) ) HSP 1 Score: 246.1 bits (627), Expect = 2.4e-65 Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 226.5 bits (576), Expect = 2.0e-59 Identity = 105/142 (73.94%), Postives = 121/142 (85.21%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) ) HSP 1 Score: 224.9 bits (572), Expect = 5.8e-59 Identity = 109/172 (63.37%), Postives = 132/172 (76.74%), Query Frame = 0
BLAST of Cucsat.G2492.T1 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 222.2 bits (565), Expect = 3.8e-58 Identity = 111/174 (63.79%), Postives = 129/174 (74.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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