Cucsat.G1942.T7 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTAAGGTTTGTATGATTGTAACAGGCCGGCCAAGAGTCATTCAGGTCCATTACAAGGTCCTACTATAGAGGTGCTGCCGGTGCCTTGCTTGTCTATGATATTACCAGGTCTTATTTTTGTTTCTTTTTCTTCTTGAATGACTAACTAATCTGCAAATGCAAAGTTCTTTTTCACTTCATCTTGATAATGCTGGATCTTTACATGCATCCTTGAATGATTAAAGAGATGGGACTTGTCATCATTCGGTTCTTTGAAATCTGTTGGAAATGGATGTCCTATTGGATTCTTAATGTGAAGTTTTTCATTCTAATATATCCTTACCGAGCTGATTATTTACACGAGAATTGTGTTCACTGCGTTATTCAGAAGGGAGACTTTCAATCACTTGATTAGCTGGTTAGAAGATGCAAGGCAGCATGCAAACGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGCGAACTGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAGAATGTTGAAGAGGTGACTACATAAAATATGCTTATGCTGAAGTACTTAGAAGCATAACGAGACTTGTTTGGGTGGAAATTTTATAGTATACTAAAAACATTTAAGAAATTCAATCACTCTAAATATGACAAGCACCCCATTTTCAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGATGTTTCAAATGAGGTAAACATCTATCTCATATCTTTTCTACTTCTTAAAGTTCCACGTACATAGATGACAAATTCGTGATTCGTTATCATAACACTGAACTAAAATGCTAATGTTTTTAACCTAAACAAACCAAAAACATCAAGAGTATATTCTACTTCCTATTGTGCATTATGCACATGGAATGCTGTCACTGACGCTGCATTTTTTATCATCCTCAGTCTTATGGAATCAAAGTTGGATATGGTGGGATTCCGGGACCGTCAGGCAGCAGAGAGGGATCATCTGCCCAAGCTGGCGGCTGTTGCAGTTGAACCATGAGATTATAGAAACTAAGCTGGCTTCAACAATCTGTTTGTGCCTGCCTTAATTCATTTCATTCTTTCATTCTTTTTCATTTTTCCTCATGTGCTGCTGTGAAATGTGAATATCCCCTCCCCCTTCCCAACCAAAAAAAGAGTAGAAGAAGCTTTTGTGTTAAAAGAAAAAGGCATTTTCTTTTAATGCTACATTTTCACTCTGCAGTCAATTCAACTGTAAATCAACATTGTTTTGAATTCATTAGTTCTTTTGGTGAAGAACCTTTAGCACCATTTCTTCATATTCGTTGTTTTTTTGTTCAATAAATGCGATGATGACAGGGTTCTTACTTTGAT ATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGCGAACTGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAGAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGATGTTTCAAATGAGTCTTATGGAATCAAAGTTGGATATGGTGGGATTCCGGGACCGTCAGGCAGCAGAGAGGGATCATCTGCCCAAGCTGGCGGCTGTTGCAGTTGA MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS Homology
BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 8.5e-45 Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 7.7e-38 Identity = 83/100 (83.00%), Postives = 87/100 (87.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2) HSP 1 Score: 154.5 bits (389), Expect = 6.5e-37 Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 6.8e-34 Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 2.8e-32 Identity = 74/102 (72.55%), Postives = 83/102 (81.37%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_004134816.1 (ras-related protein RABB1c [Cucumis sativus] >KGN49016.1 hypothetical protein Csa_003624 [Cucumis sativus]) HSP 1 Score: 194 bits (494), Expect = 6.94e-61 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_008440951.1 (PREDICTED: ras-related protein RABB1c-like [Cucumis melo] >KAA0025592.1 ras-related protein RABB1c-like [Cucumis melo var. makuwa] >TYK12467.1 ras-related protein RABB1c-like [Cucumis melo var. makuwa]) HSP 1 Score: 189 bits (481), Expect = 6.57e-59 Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: EEF37191.1 (protein with unknown function [Ricinus communis]) HSP 1 Score: 185 bits (469), Expect = 9.93e-58 Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: KDO78648.1 (hypothetical protein CISIN_1g028237mg [Citrus sinensis]) HSP 1 Score: 185 bits (469), Expect = 1.03e-57 Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_041024397.1 (ras-related protein RABB1c-like [Juglans microcarpa x Juglans regia]) HSP 1 Score: 186 bits (471), Expect = 2.17e-57 Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A0A0KMV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510340 PE=4 SV=1) HSP 1 Score: 194 bits (494), Expect = 3.36e-61 Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A5A7SKE6 (Ras-related protein RABB1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00430 PE=4 SV=1) HSP 1 Score: 189 bits (481), Expect = 3.18e-59 Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A1S3B2A4 (ras-related protein RABB1c-like OS=Cucumis melo OX=3656 GN=LOC103485212 PE=4 SV=1) HSP 1 Score: 189 bits (481), Expect = 3.18e-59 Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: B9SGV6 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0820350 PE=4 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.81e-58 Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A067GG21 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028237mg PE=4 SV=1) HSP 1 Score: 185 bits (469), Expect = 4.96e-58 Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C ) HSP 1 Score: 180.6 bits (457), Expect = 6.0e-46 Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 ) HSP 1 Score: 144.4 bits (363), Expect = 4.8e-35 Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 ) HSP 1 Score: 144.4 bits (363), Expect = 4.8e-35 Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A ) HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26 Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 0
BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C ) HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10 Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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