Cucsat.G1942.T7 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1942.T7
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ras-related protein Rab-2A
Location	ctg1002: 4489743 .. 4491158 (-)
RNA-Seq Expression	Cucsat.G1942.T7
Synteny	Cucsat.G1942.T7

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAGGTTTGTATGATTGTAACAGGCCGGCCAAGAGTCATTCAGGTCCATTACAAGGTCCTACTATAGAGGTGCTGCCGGTGCCTTGCTTGTCTATGATATTACCAGGTCTTATTTTTGTTTCTTTTTCTTCTTGAATGACTAACTAATCTGCAAATGCAAAGTTCTTTTTCACTTCATCTTGATAATGCTGGATCTTTACATGCATCCTTGAATGATTAAAGAGATGGGACTTGTCATCATTCGGTTCTTTGAAATCTGTTGGAAATGGATGTCCTATTGGATTCTTAATGTGAAGTTTTTCATTCTAATATATCCTTACCGAGCTGATTATTTACACGAGAATTGTGTTCACTGCGTTATTCAGAAGGGAGACTTTCAATCACTTGATTAGCTGGTTAGAAGATGCAAGGCAGCATGCAAACGCAAACATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGCGAACTGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAGAATGTTGAAGAGGTGACTACATAAAATATGCTTATGCTGAAGTACTTAGAAGCATAACGAGACTTGTTTGGGTGGAAATTTTATAGTATACTAAAAACATTTAAGAAATTCAATCACTCTAAATATGACAAGCACCCCATTTTCAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGATGTTTCAAATGAGGTAAACATCTATCTCATATCTTTTCTACTTCTTAAAGTTCCACGTACATAGATGACAAATTCGTGATTCGTTATCATAACACTGAACTAAAATGCTAATGTTTTTAACCTAAACAAACCAAAAACATCAAGAGTATATTCTACTTCCTATTGTGCATTATGCACATGGAATGCTGTCACTGACGCTGCATTTTTTATCATCCTCAGTCTTATGGAATCAAAGTTGGATATGGTGGGATTCCGGGACCGTCAGGCAGCAGAGAGGGATCATCTGCCCAAGCTGGCGGCTGTTGCAGTTGAACCATGAGATTATAGAAACTAAGCTGGCTTCAACAATCTGTTTGTGCCTGCCTTAATTCATTTCATTCTTTCATTCTTTTTCATTTTTCCTCATGTGCTGCTGTGAAATGTGAATATCCCCTCCCCCTTCCCAACCAAAAAAAGAGTAGAAGAAGCTTTTGTGTTAAAAGAAAAAGGCATTTTCTTTTAATGCTACATTTTCACTCTGCAGTCAATTCAACTGTAAATCAACATTGTTTTGAATTCATTAGTTCTTTTGGTGAAGAACCTTTAGCACCATTTCTTCATATTCGTTGTTTTTTTGTTCAATAAATGCGATGATGACAGGGTTCTTACTTTGAT

Coding sequence (CDS)

ATGACAATTATGCTAATTGGTAATAAGAGTGATCTTGCTCATAGAAGGGCTGTGAGCACAGAAGAGGGCGAACTGTTTGCAAAGGAGCATGGTTTAATATTCATGGAGGCATCTGCCAAAACTGCCCAGAATGTTGAAGAGGCATTCGTAAAGACAGCCGCAACCATATTCAAGAAGATTCAAGATGGAGTATTTGATGTTTCAAATGAGTCTTATGGAATCAAAGTTGGATATGGTGGGATTCCGGGACCGTCAGGCAGCAGAGAGGGATCATCTGCCCAAGCTGGCGGCTGTTGCAGTTGA

Protein sequence

MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKIQDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS

Homology

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.5e-45
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GS++Q GGCC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.7e-38
Identity = 83/100 (83.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIML+GNK DL+HRRAVS EEGE FAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKI
Sbjct: 112 MTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 101
           QDGVFDVSNESYGIKVGY  IPG SG    SS+Q GGCCS
Sbjct: 172 QDGVFDVSNESYGIKVGY-AIPGQSGGAGSSSSQGGGCCS 210

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 6.5e-37
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIML+GNK DL+HRRAVS EEGE FAKEHGLIFMEASAKTAQNVEEAFVKTA  I+KKI
Sbjct: 112 MTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 101
           QDGVFDVSNESYGIKVGY  +PG SG   GSS+Q GGCCS
Sbjct: 172 QDGVFDVSNESYGIKVGY-VVPGQSGG-AGSSSQGGGCCS 209

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.8e-34
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           M+IMLIGNK DLAH+RAVS EEG+ FAKEHGL+F+EASA+TAQNVEEAF++TAA I + I
Sbjct: 112 MSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 100
           QDGVFDVSNES GIK+GYG   G +G R+G+ +Q GGCC
Sbjct: 172 QDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot
Match: Q39570 (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-32
Identity = 74/102 (72.55%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DL HRRAV+TEEGE FAKEHGLIF+E SA+TA NVEEAF+ TA  I+KKI
Sbjct: 112 MTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGY-GGIPGPSGSR--EGSSAQAGGCC 100
           QDGVFDVSNESYGIKVGY GG  GP   +  EG +A++  CC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213

[Close]

BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_004134816.1 (ras-related protein RABB1c [Cucumis sativus] >KGN49016.1 hypothetical protein Csa_003624 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 6.94e-61
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI
Sbjct: 112 MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 211

[Close]

BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_008440951.1 (PREDICTED: ras-related protein RABB1c-like [Cucumis melo] >KAA0025592.1 ras-related protein RABB1c-like [Cucumis melo var. makuwa] >TYK12467.1 ras-related protein RABB1c-like [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (481), Expect = 6.57e-59
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNKSDLAHRRAV+TEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI
Sbjct: 112 MTIMLIGNKSDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 99
           QDGVFDVSNESYGIKVGYGGIPGPSGSREGSS+Q GGCC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSSQTGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: EEF37191.1 (protein with unknown function [Ricinus communis])

HSP 1 Score: 185 bits (469), Expect = 9.93e-58
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 65  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 124

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GSS+QAGGCCS
Sbjct: 125 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 164

[Close]

BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: KDO78648.1 (hypothetical protein CISIN_1g028237mg [Citrus sinensis])

HSP 1 Score: 185 bits (469), Expect = 1.03e-57
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GSS+QAGGCCS
Sbjct: 126 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165

[Close]

BLAST of Cucsat.G1942.T7 vs. NCBI nr
Match: XP_041024397.1 (ras-related protein RABB1c-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 186 bits (471), Expect = 2.17e-57
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 112 MTIMLIGNKCDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GSS+Q GGCCS
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQGGGCCS 211

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A0A0KMV2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510340 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.36e-61
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI
Sbjct: 112 MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 211

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A5A7SKE6 (Ras-related protein RABB1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00430 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 3.18e-59
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNKSDLAHRRAV+TEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI
Sbjct: 112 MTIMLIGNKSDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 99
           QDGVFDVSNESYGIKVGYGGIPGPSGSREGSS+Q GGCC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSSQTGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A1S3B2A4 (ras-related protein RABB1c-like OS=Cucumis melo OX=3656 GN=LOC103485212 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 3.18e-59
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNKSDLAHRRAV+TEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI
Sbjct: 112 MTIMLIGNKSDLAHRRAVTTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 99
           QDGVFDVSNESYGIKVGYGGIPGPSGSREGSS+Q GGCC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSSQTGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: B9SGV6 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0820350 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.81e-58
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 65  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 124

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GSS+QAGGCCS
Sbjct: 125 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 164

[Close]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL
Match: A0A067GG21 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028237mg PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 4.96e-58
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 66  MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 125

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCCS 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GSS+QAGGCCS
Sbjct: 126 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSSSQAGGCCS 165

[Close]

BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-46
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MTIMLIGNK DLAHRRAVSTEEGE FAKEHGLIFMEASAKTAQNVEEAF+KTAATI+KKI
Sbjct: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 100
           QDGVFDVSNESYGIKVGYGGIPGPSG R+GS++Q GGCC
Sbjct: 172 QDGVFDVSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-35
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           M+IMLIGNK DLAH+RAVS EEG+ FAKEHGL+F+EASA+TAQNVEEAF++TAA I + I
Sbjct: 112 MSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 100
           QDGVFDVSNES GIK+GYG   G +G R+G+ +Q GGCC
Sbjct: 172 QDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 210

[Close]

BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 )

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-35
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           M+IMLIGNK DLAH+RAVS EEG+ FAKEHGL+F+EASA+TAQNVEEAF++TAA I + I
Sbjct: 66  MSIMLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQNI 125

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSAQAGGCC 100
           QDGVFDVSNES GIK+GYG   G +G R+G+ +Q GGCC
Sbjct: 126 QDGVFDVSNESSGIKIGYGRTQGAAGGRDGTISQGGGCC 164

[Close]

BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-26
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           MT MLIGNK DL  +R VSTEEGE FA+EHGLIFMEASAKTA NVEEAFV+TAATI+K+I
Sbjct: 112 MTTMLIGNKCDLEDKRTVSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKRI 171

Query: 61  QDGVFDVSNESYGIKVGYGGIPGPSGSREGSSA-QAGGCC 100
           QDGV D +NE        G  PGP G ++ SS+ Q  GCC
Sbjct: 172 QDGVVDEANEP-------GITPGPFGGKDASSSQQRRGCC 204

[Close]

BLAST of Cucsat.G1942.T7 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 1   MTIMLIGNKSDLAHRRAVSTEEGELFAKEHGLIFMEASAKTAQNVEEAFVKTAATIFKKI 60
           + +ML+GNKSDL H  AV TE+ + FA++  L FME SA  A NVE AF +    I   +
Sbjct: 119 IVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIV 178

Query: 61  QDGVFDVSNE-----SYGIKVGYGGIPGPSGSREGSSAQAGGCCS 101
                + ++E     S G K+  G        ++ S+ + GGCCS
Sbjct: 179 SKKAMEAASESANVPSKGDKIDIG--------KDVSAVKKGGCCS 215

The following BLAST results are available for this feature:

BLAST of Cucsat.G1942.T7 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92963	8.5e-45	90.91	Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1	[more]
P49104	7.7e-38	83.00	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]
P49103	6.5e-37	83.00	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
Q38922	6.8e-34	71.72	Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1	[more]
Q39570	2.8e-32	72.55	GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii OX=3055 GN=YPTC4 PE=3 SV=...	[more]

BLAST of Cucsat.G1942.T7 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134816.1	6.94e-61	100.00	ras-related protein RABB1c [Cucumis sativus] >KGN49016.1 hypothetical protein Cs...	[more]
XP_008440951.1	6.57e-59	96.97	PREDICTED: ras-related protein RABB1c-like [Cucumis melo] >KAA0025592.1 ras-rela...	[more]
EEF37191.1	9.93e-58	93.00	protein with unknown function [Ricinus communis]	[more]
KDO78648.1	1.03e-57	93.00	hypothetical protein CISIN_1g028237mg [Citrus sinensis]	[more]
XP_041024397.1	2.17e-57	93.00	ras-related protein RABB1c-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of Cucsat.G1942.T7 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMV2	3.36e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510340 PE=4 SV=1	[more]
A0A5A7SKE6	3.18e-59	96.97	Ras-related protein RABB1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B2A4	3.18e-59	96.97	ras-related protein RABB1c-like OS=Cucumis melo OX=3656 GN=LOC103485212 PE=4 SV=...	[more]
B9SGV6	4.81e-58	93.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0820350 PE=4 SV=1	[more]
A0A067GG21	4.96e-58	93.00	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028237mg PE=4 SV=1	[more]

BLAST of Cucsat.G1942.T7 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17170.1	6.0e-46	90.91	RAB GTPase homolog B1C	[more]
AT4G35860.1	4.8e-35	71.72	GTP-binding 2	[more]
AT4G35860.2	4.8e-35	71.72	GTP-binding 2	[more]
AT4G17160.1	1.1e-26	66.00	RAB GTPase homolog B1A	[more]
AT5G45750.1	3.1e-10	37.14	RAB GTPase homolog A1C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 1..59 e-value: 1.6E-5 score: -40.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	PANTHER	PTHR47979:SF55	RAS-RELATED PROTEIN RABB1C-LIKE	coord: 1..100
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..100
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..99 score: 12.349978
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..63 e-value: 3.2E-19 score: 71.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..70
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 2..56 e-value: 1.4E-15 score: 57.2
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..100 score: 9.979862

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1942	Cucsat.G1942	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1942.T7.E1	Cucsat.G1942.T7.E1	exon
Cucsat.G1942.T7.E2	Cucsat.G1942.T7.E2	exon
Cucsat.G1942.T7.E3	Cucsat.G1942.T7.E3	exon
Cucsat.G1942.T7.E4	Cucsat.G1942.T7.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1942.T7.C3	Cucsat.G1942.T7.C3	CDS
Cucsat.G1942.T7.C2	Cucsat.G1942.T7.C2	CDS
Cucsat.G1942.T7.C1	Cucsat.G1942.T7.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1942.T7	Cucsat.G1942.T7-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding