Cucsat.G15684.T30 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15684.T30
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionYrdC-like domain-containing protein
Locationctg2009: 5777795 .. 5779943 (+)
RNA-Seq ExpressionCucsat.G15684.T30
SyntenyCucsat.G15684.T30
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTATTTATTTATTTATTTATGTAATGATGAAAAAAGAAAATCCAATTGAAATGTGACGTGGCATTCCAGGTGGGAAGTTCTATCTATGAACTGTGCCTCCTCTCCGATCACAGCTTCTCCCCTCTCTTTTCCTTCTCAGTTCCTAATTCCGGCGGTGCACTCACGCTGGTTCCCCAATCTCCCAAATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGTCCTCTCCTTCCTAACTACTTCTGTGTTTTTTTTTCAGCTTCATTATACCATGCCCTCGCTCCTACTTGTTCTATATGAAACTCTTATCGCTATTGCTCCGGATAGAATATCTAGTGGTGGAGGTAGAGTTGCGACAGGTGAATTAAGCATTTACGCTGTTTTCGTCGCTTATTTATTTTTACACTCTAGATAGATAATTAGTAAATTTTGCAGGAGATTGTGTTGTGGATTTGAACTGTTGGAAACACTTCTGACTGGTTAAGATTTTCCCTTCTGCGTGTGTGCGTTTCTTGTTGGGAGAGGGTGATATTATATGAACACTACTCTACTTCCACCGTGATCATATTCCAGTTTGGGATGCTTTATTGCTAGTTTTTGTTGGGAGTTAATTCAGTTGGGAATGAAATTTGGAAATTAATGAAGTTATTAGACTTGTGTTATTGATATGCTTAAAGTTACTATGGTCTTTACCAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATTTCCCTCTTACTTTATTTCACTCTCACCTTTTCAGATTTTTTTATTGTTATCATTGCTGACTCTCAAGTTGAAATTGGACGCTTGAACGAATAAATTTGTTCATAGTTAGAAAGAATCATATTTTCAATTTTTGTGTCATGCCACTCAGAAATTCAGAATTTAGGTTGTATTACCTCTTTTGGGAACAAGCTTCAAACTTCTGCAATAAATTTTTGGTTTTCCATAAATATACTTGCAATATTATTGGTTCCTTAAAATTGATTGTATCTGTATGGATCTTCTGATTGACGGATGAGAGTTCTCAAGGAAATGTAGAAGGTTTAATTTTGTGATCTTAAAGTTTACAGTGATCAGGAAAGCAGCAGGATAAATTCCTTTTTTGTTCTCACATTATTTATTATGATCTTGGTGGTTCATTTCATGAGTGTTGATTTCACTGCATTTTTGTTCCCTTGTGTACGTCTTCTTTGTCTGTCTTTTTATTTTTAACGGGTATGTATGCTTGTATTTTTCAAGGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGTTGAAGTTGTTAATTTGTTTTGCTAGAAACTGTATTTGGTTAGATACTTCAGCTTCTCTCTCCTGCTGTTAAAGTTTCTTGTTTTGTTTAATGCAGGATCAAGAATATAGAGCCTACAAAGGTATCGTTATTTTTTACAATCTCTTTTATGTGCTTTACGATAATGCTCATATGGTCCTTCAAACTGTTGAACATCAATGCTCAAATGCGTATAATAAAGTTACTGAACAAGATGGTTTATTCTACTTAGATCCCTCATTTCTGTCTTCTATACAACCCACCTTTTCATTTTTCCATTATGCTTCTTAATTTTTACTTCTAATTAACTATGCAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGACGATAACTCCATATTATCCCTCCTTCGGATTGCATGGTGTCCCAAATGACCTCTAGTACCTTTACTTTCGTAATCATGTAGATGTGAAAAAAAAAGACATTTTCT

Coding sequence (CDS)

ATGATCATCAATGTCAAACCCGGCCTACATCCTTCTACTGCTTCTTCTCTCTCTTCCTCTCGGGCTTTCGCACCAATACGCTTCCCTTCGCCTCCATCTGCCACTCCTTTCGACGGTTTTGAAACTTCCCGCCGCCTCCAGGTCCTCGCCATGGTTGTCAAGCGGAGTCCTAAGCGCCTCAAGTACTCGGCTCCACGCTTCACCAAGGAAGGGAGCTTGATATATGTCAAAGCTGAATCAGGAGAGGACGGCTGGAAATTAGACCCTATTGTTAATCTTCTAAAAGAGGGTGCAGTTGGGGTTATTCCTACTGATACCGTGTATGGAATTGTTTGTGATCTGAAGAACCCCTCAGCCATTGAACGAATGCAGAGGATCAAGAATATAGAGCCTACAAAGCCTCTGAGCATTTTGTGCCGCTCCTTCCGGGACATTGATAAATATACTACAGGGTTTCCTCGTGGTGATGGCCAAGGCCATTCAAGTATATTTCGCATGGTTAAGCATTGTCTACCTGGACCAGTGAGTGGTTCTGCTAATCCTTCCTTATGA

Protein sequence

MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRLKYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVSGSANPSL
Homology
[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match: Q0VC80 (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 32/96 (33.33%), Postives = 46/96 (47.92%), Query Frame = 0 

Query: 84  GW--KLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPTKPLSILCRS 143
           GW   L   V  L+ GAV  +PTDT+YG+ C      A+  + R+K    TKPL++    
Sbjct: 63  GWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGR 122

Query: 144 FRDIDKYT-TGFPRGDGQGHSSIFRMVKHCLPGPVS 177
             D+ +Y     P G          ++K  LPGPV+
Sbjct: 123 VADVYRYCHVRVPEG----------LLKDLLPGPVT 148

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match: Q86U90 (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 35/105 (33.33%), Postives = 51/105 (48.57%), Query Frame = 0 

Query: 76  VKAESGE-DGW--KLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPT 135
           V+A S E  GW   L   V  L+ GAV  +PTDT+YG+ C     +A+  + R+K     
Sbjct: 56  VQAASPERAGWTEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEA 115

Query: 136 KPLSILCRSFRDIDKY-TTGFPRGDGQGHSSIFRMVKHCLPGPVS 177
           KPL++      D+ +Y     P G          ++K  LPGPV+
Sbjct: 116 KPLAVCLGRVADVYRYCRVRVPEG----------LLKDLLPGPVT 150

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match: Q3U5F4 (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 33/105 (31.43%), Postives = 51/105 (48.57%), Query Frame = 0 

Query: 76  VKAESGE-DGW--KLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPT 135
           V+A S E  GW   L   V  L+ GAV  +PTDT+YG+ C   + +A+  + R+K     
Sbjct: 57  VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEA 116

Query: 136 KPLSILCRSFRDIDKY-TTGFPRGDGQGHSSIFRMVKHCLPGPVS 177
           KPL++      D+ +Y     PR           +++   PGPV+
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVT 151

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match: Q499R4 (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-05
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0 

Query: 76  VKAESGE-DGW--KLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPT 135
           V+A S E  GW   L   V  L+ GAV  +PTDT+YG+ C     +A+  + R+K     
Sbjct: 57  VEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEA 116

Query: 136 KPLSILCRSFRDIDKY-TTGFPRGDGQGHSSIFRMVKHCLPGPVS 177
           KPL++      D+ +Y     PR           +++   PGPV+
Sbjct: 117 KPLAVCLGRVADVYRYCQVRVPR----------ELLEDLFPGPVT 151

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match: Q3KKE2 (Threonylcarbamoyl-AMP synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=tsaC PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 22/72 (30.56%), Postives = 37/72 (51.39%), Query Frame = 0 

Query: 83  DGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPTKPLSILCRSF 142
           + W++      ++ GAV   PT+ V+G+ CD  N  A++R+  IKN    K L ++  + 
Sbjct: 3   NSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNI 62

Query: 143 RDIDKYTTGFPR 155
           R  D     FP+
Sbjct: 63  RQFDFLFEDFPQ 74

[Close]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match: XP_004145661.1 (uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hypothetical protein Csa_017456 [Cucumis sativus])

HSP 1 Score: 353 bits (905), Expect = 1.65e-120
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGP +
Sbjct: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match: XP_031739482.1 (uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus])

HSP 1 Score: 353 bits (905), Expect = 1.76e-120
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGP +
Sbjct: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match: XP_016900863.1 (PREDICTED: yrdC domain-containing protein, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 330 bits (845), Expect = 4.75e-112
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINV+  LHPSTASSLSS R+FAPIRFPSPPSA+ FDGF TSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVRSNLHPSTASSLSSLRSFAPIRFPSPPSASRFDGFRTSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERM+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 ERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match: XP_008450106.1 (PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo])

HSP 1 Score: 330 bits (845), Expect = 2.20e-111
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINV+  LHPSTASSLSS R+FAPIRFPSPPSA+ FDGF TSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVRSNLHPSTASSLSSLRSFAPIRFPSPPSASRFDGFRTSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERM+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 ERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match: XP_038877956.1 (uncharacterized protein YciO [Benincasa hispida])

HSP 1 Score: 308 bits (789), Expect = 8.45e-103
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MI+NVK  ++PSTASS SS R++APIRFP  PSA  F G ETSRRLQVLA VVKRSPKRL
Sbjct: 1   MIVNVKSDVYPSTASSFSSVRSYAPIRFPPSPSAIRFHGSETSRRLQVLARVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSL+YVKAESGEDGWKL+PIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLLYVKAESGEDGWKLEPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ER++RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 ERIRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match: A0A0A0LBV9 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 7.97e-121
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGP +
Sbjct: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match: A0A1S4DY13 (yrdC domain-containing protein, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 2.30e-112
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINV+  LHPSTASSLSS R+FAPIRFPSPPSA+ FDGF TSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVRSNLHPSTASSLSSLRSFAPIRFPSPPSASRFDGFRTSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERM+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 ERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match: A0A1S3BMX4 (uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 1.07e-111
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINV+  LHPSTASSLSS R+FAPIRFPSPPSA+ FDGF TSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVRSNLHPSTASSLSSLRSFAPIRFPSPPSASRFDGFRTSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120
           KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI
Sbjct: 61  KYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAI 120

Query: 121 ERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           ERM+RIKNIEP+KPLSILC SFRDIDKYTTGFPRGDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 ERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPRGDGQGHSNIFRMVKHCLPGPYT 176

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match: A0A5D3C4N1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001410 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 1.03e-102
Identity = 162/220 (73.64%), Postives = 169/220 (76.82%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASSLSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKRL 60
           MIINV+  LHPSTASSLSS R+FAPIRFPSPPSA+ FDGF TSRRLQVLAMVVKRSPKRL
Sbjct: 1   MIINVRSNLHPSTASSLSSLRSFAPIRFPSPPSASRFDGFRTSRRLQVLAMVVKRSPKRL 60

Query: 61  KYSAPRFTK--------------------------------------------EGSLIYV 120
           KYSAPRFTK                                            EGSLIYV
Sbjct: 61  KYSAPRFTKVLSLLTTPVCFSASLCPRSYLFYMKLLSLLLGIEYLVVQVELRQEGSLIYV 120

Query: 121 KAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMQRIKNIEPTKPLS 176
           KAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERM+RIKNIEP+KPLS
Sbjct: 121 KAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSAIERMRRIKNIEPSKPLS 180

[Close]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match: A0A6J1J9P6 (uncharacterized protein LOC111482522 OS=Cucurbita maxima OX=3661 GN=LOC111482522 PE=3 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.91e-99
Identity = 149/177 (84.18%), Postives = 160/177 (90.40%), Query Frame = 0 

Query: 1   MIINVKPGLHPSTASS-LSSSRAFAPIRFPSPPSATPFDGFETSRRLQVLAMVVKRSPKR 60
           MI+NVK   +PS ASS LSS R+FAPIRFPSPP A  FDG  TSRRLQVLAM VKRSPKR
Sbjct: 1   MIVNVKSSGYPSAASSSLSSVRSFAPIRFPSPPRAVRFDGSRTSRRLQVLAMAVKRSPKR 60

Query: 61  LKYSAPRFTKEGSLIYVKAESGEDGWKLDPIVNLLKEGAVGVIPTDTVYGIVCDLKNPSA 120
           LKYSAPRFTK+GSL+YVKAESGED WKL+PIV+LLKEGAVGVIPTDTVY IVCDLKNPSA
Sbjct: 61  LKYSAPRFTKDGSLLYVKAESGEDAWKLEPIVDLLKEGAVGVIPTDTVYAIVCDLKNPSA 120

Query: 121 IERMQRIKNIEPTKPLSILCRSFRDIDKYTTGFPRGDGQGHSSIFRMVKHCLPGPVS 176
           IERM+RIKNIEP+KPLSILC SFRDIDKYTTGFP GDGQGHS+IFRMVKHCLPGP +
Sbjct: 121 IERMRRIKNIEPSKPLSILCHSFRDIDKYTTGFPCGDGQGHSNIFRMVKHCLPGPYT 177

The following BLAST results are available for this feature:
BLAST of Cucsat.G15684.T30 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0VC802.2e-0633.33YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2... [more]
Q86U904.9e-0633.33YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE... [more]
Q3U5F41.1e-0531.43YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P... [more]
Q499R43.2e-0531.43YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y... [more]
Q3KKE21.2e-0430.56Threonylcarbamoyl-AMP synthase OS=Pseudomonas fluorescens (strain Pf0-1) OX=2059... [more]
BLAST of Cucsat.G15684.T30 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145661.11.65e-12098.86uncharacterized protein LOC101214648 isoform X2 [Cucumis sativus] >KGN58172.1 hy... [more]
XP_031739482.11.76e-12098.86uncharacterized protein LOC101214648 isoform X1 [Cucumis sativus][more]
XP_016900863.14.75e-11292.05PREDICTED: yrdC domain-containing protein, mitochondrial isoform X2 [Cucumis mel... [more]
XP_008450106.12.20e-11192.05PREDICTED: uncharacterized protein YciO isoform X1 [Cucumis melo][more]
XP_038877956.18.45e-10385.80uncharacterized protein YciO [Benincasa hispida][more]
BLAST of Cucsat.G15684.T30 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV97.97e-12198.86YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G585350 P... [more]
A0A1S4DY132.30e-11292.05yrdC domain-containing protein, mitochondrial isoform X2 OS=Cucumis melo OX=3656... [more]
A0A1S3BMX41.07e-11192.05uncharacterized protein YciO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491794 ... [more]
A0A5D3C4N11.03e-10273.64YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1J9P61.91e-9984.18uncharacterized protein LOC111482522 OS=Cucurbita maxima OX=3661 GN=LOC111482522... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.870.10DHBP synthasecoord: 72..178
e-value: 9.4E-23
score: 82.3
NoneNo IPR availablePIRSRPIRSR004930-1PIRSR004930-1coord: 85..175
e-value: 1.3E-12
score: 45.3
NoneNo IPR availablePANTHERPTHR42828DHBP SYNTHASE RIBB-LIKE ALPHA/BETA DOMAIN-CONTAINING PROTEINcoord: 17..174
IPR006070YrdC-like domainPFAMPF01300Sua5_yciO_yrdCcoord: 93..175
e-value: 3.0E-20
score: 72.5
IPR006070YrdC-like domainPROSITEPS51163YRDCcoord: 84..183
score: 11.368654
IPR017945DHBP synthase RibB-like alpha/beta domain superfamilySUPERFAMILY55821YrdC/RibBcoord: 80..175

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15684Cucsat.G15684gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T30.E1Cucsat.G15684.T30.E1exon
Cucsat.G15684.T30.E2Cucsat.G15684.T30.E2exon
Cucsat.G15684.T30.E3Cucsat.G15684.T30.E3exon
Cucsat.G15684.T30.E4Cucsat.G15684.T30.E4exon
Cucsat.G15684.T30.E5Cucsat.G15684.T30.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T30.C1Cucsat.G15684.T30.C1CDS
Cucsat.G15684.T30.C2Cucsat.G15684.T30.C2CDS
Cucsat.G15684.T30.C3Cucsat.G15684.T30.C3CDS
Cucsat.G15684.T30.C4Cucsat.G15684.T30.C4CDS
Cucsat.G15684.T30.C5Cucsat.G15684.T30.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15684.T30Cucsat.G15684.T30-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0016740 transferase activity