Cucsat.G12789.T4 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCGTTTATGTTTTTCTTTGGAATTTTGGCTGCTTTTTCCCGATCTCTTGATTTGTTGAGGGATTTGAGTCTTTATGAGAGATCAAAGGAGGAATATGGAAATGGGTTTTAATTTTCATTTTAATTGGATGTACCTCTATGGATCTCCTTCTTGAACTTGAAACTAATTGAAAACTCGCGTCGAGCAATAACCCAATTGATTTGGTAATCCTTTGCTCCGGGTGTTTCAAATCTAATGGCCAATGTTTGGTGTTTGTTAAGGCTAGATAGTTTGTGGTGATGTCTCTGTTGAGGAAATGAATTGTTGGGGTCTTCTTGGAGGACCTTCTCAATGAATTAATTAATTAATGTTGTTTTTTTATGAAATTTAAGAATGGATCTTTTGTTTTATGTAGTTTCTTTGATAGTGGCATAAGAAGTCGTCGTTTGATTTTATGTTCCCTTTCAAGCTATTGGTATGGCTAATTGCCGTGAATGATCTCTTATTCTAACGATGATTTGTTACCTGTGTATGCTGCAGTGACACATCCGTCGGTGTTGCACATGATGCTTTCAACACGTTTTTCAGCGAAACTGGTTCGGGCAAGCATGTTCCTAGAGCAATATTTGTGGATCTGGAACCAACTGTTATCGATGAAGTGAGGACCGGAACATACCGTCAGCTTTTCCATCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCGAGAGGACATTATACAGGTACTTGTGTTTGTGTTCCTTCAAGTTTTTCTATAGTTTCCTTTTTCACTATTGTCATTTTTTACTAAATCTACATTATTGCATCATTCCAGTGGGCAGGGAAATAGTTGATCTATGCCTCGACCGAGTGCGAAAATTAGCCGACAATTGCACTGGTTTACAAGGGTTCTTGGTATTCAATGCTGTTGGTGGTGGCACTGGATCTGGATTGGGGTCATTACTTTTGGAACGCTTGTCTGTGGATTACGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTAAGACACAAATTATAAAGGCTTTGGTAGTATACACCAAACATTTTTCATAAATTATGGTGACAAAACACTATGAAAAGGCCACTGACCTTTTGTCAAGATTTTTCGTATTAAAAGGTTTCTTATCTGGAAAAAATTTGTTTCTGATGAGAAATACTGAGTTGACGTGTATTCTTCTCCACAGATTTTTCCTCATTCTCACTGTCCATCATAAATCTAAATGCTACCTTCTTTGTGTGCAGGTATCTACTGCTGTGGTAGAACCCTACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTTGCTGTTCTTCTCGATAATGAAGCCATTTACGATATCTGTAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGATTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGCGGTTTGATGGTGCTATCAACGTGGATATAACTGAGTTTCAAACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTCTCTTCTTATGCTCCTGTGATTTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTCCCTGAAATTACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGCGATCCCAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACTATCAAAACAAAGCGAACAGTTCAATTTGTCGACTGGTGAGTTAACTGCTCTGTATTGTTAGATTATGAAGCCAATTATACTTTTTTAACTCTGCAGAAATAAAAAAATTAATTTGGCTCAGCATATGATTGAAATCAAGCTATAAAGTATGATGCACATCCATAAGTAACCATCCTCAAAGGATGCTAGTTTAGTTTGTCAACTTTAGAAAAGGTTCTTGCAAATCATAGGGCATACGTAATTTTCTAAATGTTTTGCTATGAATTAAAGTTATGCAATGGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAGCCACCAAGTGTTGTTCCTGGAGGCGATCTTGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAATAGCACAGCCGTTGCCGAAGTATTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCCGAAGCCCGTGAGGATCTCGCTGCACTAGAAAAGGACTACGAGGAAGTCGGAGCAGAAGATGTCGATGAAGAGGAAGAAGGGGATGATTATTGAGCTCGTGAATAATAATATACCCTGTGTATCTTTTTTTTCTTTTCGTTGTTTTTGTGTTTGTTTCTTGTTAAGTCAAGTTGTGCAATGTTTCATACATGGTGATATATCTTGAAGGTGTGGTTTATGTTCTTTTGTATGATTCTGGGGTCTGTCATTCTATTGATTTCGAAATTTTACAGTGTTTAGAAACTACTTTGCAAAGTTTATTATGAGGAGACGAGGTTTCTGTAAAGATCTTTCCGAGGAGTTCCCTTTGAAACTTTCTCGGATTTTCACCTCATGGAATCCACAATTCGTATTGCGAAGGCCAAGTGTTTTTGGCATTGCTTCTAAGTAATTTTGGATAACAATATGTACTTCTGATTTAATTATTTCCTGTTGAAGAAATATGTAATAAGCCCTTATCTGAAGGCTTTGTTTCGATTATTTTTTTTGAATGATTTTTTAAGGATTTGAGAATTTCTAAATTTTGAACATTTGAAATCAATTAGAATGGTTAATATTAT ATGCTCTCTTCTTATGCTCCTGTGATTTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTCCCTGAAATTACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGCGATCCCAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACTATCAAAACAAAGCGAACAGTTCAATTTGTCGACTGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAGCCACCAAGTGTTGTTCCTGGAGGCGATCTTGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAATAGCACAGCCGTTGCCGAAGTATTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCCGAAGCCCGTGAGGATCTCGCTGCACTAGAAAAGGACTACGAGGAAGTCGGAGCAGAAGATGTCGATGAAGAGGAAGAAGGGGATGATTATTGA MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGDDY Homology
BLAST of Cucsat.G12789.T4 vs. ExPASy Swiss-Prot
Match: Q43473 (Tubulin alpha-1 chain OS=Hordeum vulgare OX=4513 GN=TUBA1 PE=2 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96 Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy Swiss-Prot
Match: Q02245 (Tubulin alpha-5 chain OS=Zea mays OX=4577 GN=TUBA5 PE=2 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96 Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy Swiss-Prot
Match: P33627 (Tubulin alpha-6 chain OS=Zea mays OX=4577 GN=TUBA6 PE=2 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96 Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy Swiss-Prot
Match: O22349 (Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 1.5e-95 Identity = 172/183 (93.99%), Postives = 178/183 (97.27%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy Swiss-Prot
Match: P28752 (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=1) HSP 1 Score: 349.0 bits (894), Expect = 3.3e-95 Identity = 171/183 (93.44%), Postives = 178/183 (97.27%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. NCBI nr
Match: XP_004141134.1 (tubulin alpha-6 chain [Cucumis sativus] >KGN59749.1 hypothetical protein Csa_001017 [Cucumis sativus]) HSP 1 Score: 367 bits (941), Expect = 5.57e-124 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. NCBI nr
Match: XP_022930580.1 (tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022980617.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023526047.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAG6581659.1 Tubulin alpha-3 chain, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018153.1 Tubulin alpha-3 chain [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 365 bits (937), Expect = 2.25e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. NCBI nr
Match: XP_008464962.1 (PREDICTED: tubulin alpha-3 chain-like [Cucumis melo] >XP_022932678.1 tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022972128.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023539676.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAA0057190.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa] >TYK18771.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa]) HSP 1 Score: 365 bits (937), Expect = 2.25e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. NCBI nr
Match: XP_038904017.1 (tubulin alpha-5 chain-like [Benincasa hispida]) HSP 1 Score: 365 bits (937), Expect = 2.25e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. NCBI nr
Match: XP_022155952.1 (tubulin alpha-3 chain-like [Momordica charantia]) HSP 1 Score: 365 bits (936), Expect = 3.19e-123 Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy TrEMBL
Match: A0A0A0LFM5 (Tubulin alpha chain OS=Cucumis sativus OX=3659 GN=Csa_3G842710 PE=3 SV=1) HSP 1 Score: 367 bits (941), Expect = 2.70e-124 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy TrEMBL
Match: A0A5D3D5F0 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00780 PE=3 SV=1) HSP 1 Score: 365 bits (937), Expect = 1.09e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy TrEMBL
Match: A0A6J1I8Z7 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111470761 PE=3 SV=1) HSP 1 Score: 365 bits (937), Expect = 1.09e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy TrEMBL
Match: A0A6J1IRT1 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111479935 PE=3 SV=1) HSP 1 Score: 365 bits (937), Expect = 1.09e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cucsat.G12789.T4 vs. ExPASy TrEMBL
Match: A0A6J1EX84 (Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111436987 PE=3 SV=1) HSP 1 Score: 365 bits (937), Expect = 1.09e-123 Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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