Cucsat.G12789 (gene) Cucumber (B10) v3

Overview
NameCucsat.G12789
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTubulin alpha chain
Locationctg1838: 4393936 .. 4397474 (-)
RNA-Seq ExpressionCucsat.G12789
SyntenyCucsat.G12789
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATCTCTAATCATTGTTCAATAAATTAAAAAATTTGGATATATGTATGTGTCTATATATATATAGATAGTCAACTTGGACGAAGAAGAAGAGCGTGTGAGGAAAGAATAGAAGAAAAAGAAAGAGGGTGAAAATGGAAGGACCCTTCAGCTAAAACTACCGTCTCATCATCCCCACACTCAATACCGACACTTGGTTTGAGTTTAAACCCTAAAATACACAAATTAACAAACTTTCTTTCATTTCTAAAAATCTCCCTTTTTTTACCCATTAATAATAATAATTCATTAATTGATTGATTGGTTTATTTATTTATTCAATCAATTATCCCTATTTTTCTTTCTGCGAGCCGGCAATTTCATTCAGCGGCATCTTCTTCCCACCCCGGCCCCTCTTTTCCTTTACTCTCTCTCTCTCTTTTCTCTCCATCCTTCCCCTCCTTGAGAGAGATCGGGTTTTGATTCGGGATGAGGGAGATTATCAGTCTTCATATCGGTCAAGCTGGAATCCAGGTCGGTAATTCTTGCTGGGAGCTTTACTGCCTCGAACATGGCATTCAGCCCGATGGTTTGATGCCCAGGTTTGTAGTTTTTTTCTTTTTTTTTTTTGGGGTTCTTACTTGATTTCTTGATCTGGGTTTGGTTTTTTTTGTCCATTGATGTCCCCTATACATCAGTATTGATCCTTGATTTGTTTTTTTTTTCTTGACTGGATAGATTAGACTCAATTTCCCTTGTATTGATTGGTGTGTGTGTGTGGGATTGATTTGTATTTCTGGGACTGGATTTCGTTTATGTTTTTCTTTGGAATTTTGGCTGCTTTTTCCCGATCTCTTGATTTGTTGAGGGATTTGAGTCTTTATGAGAGATCAAAGGAGGAATATGGAAATGGGTTTTAATTTTCATTTTAATTGGATGTACCTCTATGGATCTCCTTCTTGAACTTGAAACTAATTGAAAACTCGCGTCGAGCAATAACCCAATTGATTTGGTAATCCTTTGCTCCGGGTGTTTCAAATCTAATGGCCAATGTTTGGTGTTTGTTAAGGCTAGATAGTTTGTGGTGATGTCTCTGTTGAGGAAATGAATTGTTGGGGTCTTCTTGGAGGACCTTCTCAATGAATTAATTAATTAATGTTGTTTTTTTATGAAATTTAAGAATGGATCTTTTGTTTTATGTAGTTTCTTTGATAGTGGCATAAGAAGTCGTCGTTTGATTTTATGTTCCCTTTCAAGCTATTGGTATGGCTAATTGCCGTGAATGATCTCTTATTCTAACGATGATTTGTTACCTGTGTATGCTGCAGTGACACATCCGTCGGTGTTGCACATGATGCTTTCAACACGTTTTTCAGCGAAACTGGTTCGGGCAAGCATGTTCCTAGAGCAATATTTGTGGATCTGGAACCAACTGTTATCGATGAAGTGAGGACCGGAACATACCGTCAGCTTTTCCATCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCGAGAGGACATTATACAGGTACTTGTGTTTGTGTTCCTTCAAGTTTTTCTATAGTTTCCTTTTTCACTATTGTCATTTTTTACTAAATCTACATTATTGCATCATTCCAGTGGGCAGGGAAATAGTTGATCTATGCCTCGACCGAGTGCGAAAATTAGCCGACAATTGCACTGGTTTACAAGGGTTCTTGGTATTCAATGCTGTTGGTGGTGGCACTGGATCTGGATTGGGGTCATTACTTTTGGAACGCTTGTCTGTGGATTACGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTAAGACACAAATTATAAAGGCTTTGGTAGTATACACCAAACATTTTTCATAAATTATGGTGACAAAACACTATGAAAAGGCCACTGACCTTTTGTCAAGATTTTTCGTATTAAAAGGTTTCTTATCTGGAAAAAATTTGTTTCTGATGAGAAATACTGAGTTGACGTGTATTCTTCTCCACAGATTTTTCCTCATTCTCACTGTCCATCATAAATCTAAATGCTACCTTCTTTGTGTGCAGGTATCTACTGCTGTGGTAGAACCCTACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTTGCTGTTCTTCTCGATAATGAAGCCATTTACGATATCTGTAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGATTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGCGGTTTGATGGTGCTATCAACGTGGATATAACTGAGTTTCAAACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTCTCTTCTTATGCTCCTGTGATTTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTCCCTGAAATTACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGCGATCCCAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACTATCAAAACAAAGCGAACAGTTCAATTTGTCGACTGGTGAGTTAACTGCTCTGTATTGTTAGATTATGAAGCCAATTATACTTTTTTAACTCTGCAGAAATAAAAAAATTAATTTGGCTCAGCATATGATTGAAATCAAGCTATAAAGTATGATGCACATCCATAAGTAACCATCCTCAAAGGATGCTAGTTTAGTTTGTCAACTTTAGAAAAGGTTCTTGCAAATCATAGGGCATACGTAATTTTCTAAATGTTTTGCTATGAATTAAAGTTATGCAATGGGAATTTTCCAGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAGCCACCAAGTGTTGTTCCTGGAGGCGATCTTGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAATAGCACAGCCGTTGCCGAAGTATTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCCGAAGCCCGTGAGGATCTCGCTGCACTAGAAAAGGACTACGAGGAAGTCGGAGCAGAAGATGTCGATGAAGAGGAAGAAGGGGATGATTATTGAGCTCGTGAATAATAATATACCCTGTGTATCTTTTTTTTCTTTTCGTTGTTTTTGTGTTTGTTTCTTGTTAAGTCAAGTTGTGCAATGTTTCATACATGGTGATATATCTTGAAGGTGTGGTTTATGTTCTTTTGTATGATTCTGGGGTCTGTCATTCTATTGATTTCGAAATTTTACAGTGTTTAGAAACTACTTTGCAAAGTTTATTATGAGGAGACGAGGTTTCTGTAAAGATCTTTCCGAGGAGTTCCCTTTGAAACTTTCTCGGATTTTCACCTCATGGAATCCACAATTCGTATTGCGAAGGCCAAGTGTTTTTGGCATTGCTTCTAAGTAATTTTGGATAACAATATGTACTTCTGATTTAATTATTTCCTGTTGAAGAAATATGTAATAAGCCCTTATCTGAAGGCTTTGTTTCGATTATTTTTTTTGAATGATTTTTTAAGGATTTGAGAATTTCTAAATTTTGAACATTTGAAATCAATTAGAATGGTTAATATTATTTT

Coding sequence (CDS)

ATGAGGGAGATTATCAGTCTTCATATCGGTCAAGCTGGAATCCAGGTCGGTAATTCTTGCTGGGAGCTTTACTGCCTCGAACATGGCATTCAGCCCGATGGTTTGATGCCCAGTGACACATCCGTCGGTGTTGCACATGATGCTTTCAACACGTTTTTCAGCGAAACTGGTTCGGGCAAGCATGTTCCTAGAGCAATATTTGTGGATCTGGAACCAACTGTTATCGATGAAGTGAGGACCGGAACATACCGTCAGCTTTTCCATCCGGAACAGCTCATATCTGGTAAAGAAGATGCTGCAAATAATTTTGCGAGAGGACATTATACAGTGGGCAGGGAAATAGTTGATCTATGCCTCGACCGAGTGCGAAAATTAGCCGACAATTGCACTGGTTTACAAGGGTTCTTGGTATTCAATGCTGTTGGTGGTGGCACTGGATCTGGATTGGGGTCATTACTTTTGGAACGCTTGTCTGTGGATTACGGAAAGAAGTCAAAGCTTGGATTTTCCATATATCCTTCTCCACAGGTATCTACTGCTGTGGTAGAACCCTACAACAGTGTGCTTTCCACTCATTCTCTGCTAGAACACACAGATGTTGCTGTTCTTCTCGATAATGAAGCCATTTACGATATCTGTAGGAGATCATTGGATATTGAAAGACCAACTTACACCAACTTGAACCGATTGATATCCCAAGTTATCTCTTCTTTAACCACTTCCTTGCGGTTTGATGGTGCTATCAACGTGGATATAACTGAGTTTCAAACTAACCTTGTACCTTATCCACGTATCCATTTCATGCTCTCTTCTTATGCTCCTGTGATTTCTTCTGCAAAAGCTTACCATGAGCAGCTATCCGTCCCTGAAATTACCAATGCTGTATTTGATCCCTCAAGCATGATGGTCAAGTGCGATCCCAGGCACGGAAAGTACATGGCATGCTGTTTGATGTATAGAGGAGATGTTGTACCCAAGGATGTGAATGCTGCTGTTGCTACTATCAAAACAAAGCGAACAGTTCAATTTGTCGACTGGTGTCCTACTGGCTTCAAATGCGGTATTAACTATCAGCCACCAAGTGTTGTTCCTGGAGGCGATCTTGCCAAGGTGCAGCGAGCTGTCTGTATGATAAGCAATAGCACAGCCGTTGCCGAAGTATTTTCAAGAATTGACCACAAATTCGATCTTATGTATGCTAAGCGCGCATTTGTCCATTGGTATGTGGGGGAGGGCATGGAGGAAGGCGAATTCTCCGAAGCCCGTGAGGATCTCGCTGCACTAGAAAAGGACTACGAGGAAGTCGGAGCAGAAGATGTCGATGAAGAGGAAGAAGGGGATGATTATTGA

Protein sequence

MREIISLHIGQAGIQVGNSCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFSIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGDDY
Homology
[Close]
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match: Q43473 (Tubulin alpha-1 chain OS=Hordeum vulgare OX=4513 GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEG 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EG
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEG 447

Query: 181 DDY 183
           DDY
Sbjct: 448 DDY 450

[Close]
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match: Q02245 (Tubulin alpha-5 chain OS=Zea mays OX=4577 GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEG 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EG
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEG 447

Query: 181 DDY 183
           DDY
Sbjct: 448 DDY 450

[Close]
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match: P33627 (Tubulin alpha-6 chain OS=Zea mays OX=4577 GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-96
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEG 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EG
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEG 447

Query: 181 DDY 183
           DDY
Sbjct: 448 DDY 450

[Close]
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match: O22349 (Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.5e-95
Identity = 172/183 (93.99%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEG 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E +EG
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDEGDEG 447

Query: 181 DDY 183
           +DY
Sbjct: 448 EDY 450

[Close]
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match: P28752 (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 3.3e-95
Identity = 171/183 (93.44%), Postives = 178/183 (97.27%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVIS+ KAYHEQLSVPEITNAVF+PSSMM KCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISN+TAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEE-EEG 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE  D+E ++G
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGADDENDDG 447

Query: 181 DDY 183
           +DY
Sbjct: 448 EDY 450

[Close]
BLAST of Cucsat.G12789 vs. NCBI nr
Match: XP_004141134.1 (tubulin alpha-6 chain [Cucumis sativus] >KGN59749.1 hypothetical protein Csa_001017 [Cucumis sativus])

HSP 1 Score: 367 bits (941), Expect = 5.57e-124
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. NCBI nr
Match: XP_022930580.1 (tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022980617.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023526047.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAG6581659.1 Tubulin alpha-3 chain, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018153.1 Tubulin alpha-3 chain [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (937), Expect = 2.25e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. NCBI nr
Match: XP_008464962.1 (PREDICTED: tubulin alpha-3 chain-like [Cucumis melo] >XP_022932678.1 tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022972128.1 tubulin alpha-3 chain-like [Cucurbita maxima] >XP_023539676.1 tubulin alpha-3 chain-like [Cucurbita pepo subsp. pepo] >KAA0057190.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa] >TYK18771.1 tubulin alpha-3 chain-like [Cucumis melo var. makuwa])

HSP 1 Score: 365 bits (937), Expect = 2.25e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. NCBI nr
Match: XP_038904017.1 (tubulin alpha-5 chain-like [Benincasa hispida])

HSP 1 Score: 365 bits (937), Expect = 2.25e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. NCBI nr
Match: XP_022155952.1 (tubulin alpha-3 chain-like [Momordica charantia])

HSP 1 Score: 365 bits (936), Expect = 3.19e-123
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAED+DEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDIDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match: A0A0A0LFM5 (Tubulin alpha chain OS=Cucumis sativus OX=3659 GN=Csa_3G842710 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 2.70e-124
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match: A0A5D3D5F0 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00780 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.09e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match: A0A6J1I8Z7 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111470761 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.09e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match: A0A6J1IRT1 (Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111479935 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.09e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

[Close]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match: A0A6J1EX84 (Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111436987 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 1.09e-123
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 60
           MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD
Sbjct: 268 MLSSYAPVISSAKAYHEQLSVPEITNAVFDPSSMMVKCDPRHGKYMACCLMYRGDVVPKD 327

Query: 61  VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 120
           VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV
Sbjct: 328 VNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTAVAEV 387

Query: 121 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGD 180
           FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEG+
Sbjct: 388 FSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEDVDEEEEGE 447

Query: 181 DY 182
           DY
Sbjct: 448 DY 449

The following BLAST results are available for this feature:
BLAST of Cucsat.G12789 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q434735.1e-9694.54Tubulin alpha-1 chain OS=Hordeum vulgare OX=4513 GN=TUBA1 PE=2 SV=1[more]
Q022455.1e-9694.54Tubulin alpha-5 chain OS=Zea mays OX=4577 GN=TUBA5 PE=2 SV=1[more]
P336275.1e-9694.54Tubulin alpha-6 chain OS=Zea mays OX=4577 GN=TUBA6 PE=2 SV=1[more]
O223491.5e-9593.99Tubulin alpha-3 chain OS=Eleusine indica OX=29674 GN=TUBA3 PE=2 SV=1[more]
P287523.3e-9593.44Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA1 PE=1 SV=... [more]
BLAST of Cucsat.G12789 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141134.15.57e-124100.00tubulin alpha-6 chain [Cucumis sativus] >KGN59749.1 hypothetical protein Csa_001... [more]
XP_022930580.12.25e-12399.45tubulin alpha-3 chain-like [Cucurbita moschata] >XP_022980617.1 tubulin alpha-3 ... [more]
XP_008464962.12.25e-12399.45PREDICTED: tubulin alpha-3 chain-like [Cucumis melo] >XP_022932678.1 tubulin alp... [more]
XP_038904017.12.25e-12399.45tubulin alpha-5 chain-like [Benincasa hispida][more]
XP_022155952.13.19e-12398.90tubulin alpha-3 chain-like [Momordica charantia][more]
BLAST of Cucsat.G12789 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFM52.70e-124100.00Tubulin alpha chain OS=Cucumis sativus OX=3659 GN=Csa_3G842710 PE=3 SV=1[more]
A0A5D3D5F01.09e-12399.45Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G... [more]
A0A6J1I8Z71.09e-12399.45Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111470761 PE=3 SV=1[more]
A0A6J1IRT11.09e-12399.45Tubulin alpha chain OS=Cucurbita maxima OX=3661 GN=LOC111479935 PE=3 SV=1[more]
A0A6J1EX841.09e-12399.45Tubulin alpha chain OS=Cucurbita moschata OX=3662 GN=LOC111436987 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 10..30
score: 64.79
coord: 108..132
score: 58.79
coord: 53..72
score: 66.02
coord: 153..174
score: 49.54
coord: 95..106
score: 64.97
coord: 178..191
score: 71.97
coord: 134..152
score: 66.84
coord: 192..212
score: 61.21
IPR000217TubulinPANTHERPTHR11588TUBULINcoord: 1..346
IPR002452Alpha tubulinPRINTSPR01162ALPHATUBULINcoord: 274..289
score: 75.26
coord: 88..101
score: 94.12
coord: 214..226
score: 86.36
coord: 321..342
score: 87.24
coord: 161..172
score: 81.72
coord: 148..160
score: 86.23
coord: 18..33
score: 90.65
coord: 45..58
score: 72.57
coord: 120..128
score: 80.77
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 49..246
e-value: 1.4E-74
score: 263.7
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 3..213
e-value: 2.8E-68
score: 230.0
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 248..346
e-value: 2.9E-16
score: 70.0
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 263..346
e-value: 1.3E-33
score: 115.8
IPR037103Tubulin/FtsZ-like, C-terminal domainGENE3D3.30.1330.20coord: 266..346
e-value: 3.0E-38
score: 132.4
IPR036525Tubulin/FtsZ, GTPase domain superfamilyGENE3D3.40.50.1440Tubulin/FtsZ, GTPase domaincoord: 1..265
e-value: 1.8E-129
score: 432.8
IPR036525Tubulin/FtsZ, GTPase domain superfamilySUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 1..245
NoneNo IPR availablePANTHERPTHR11588:SF382TUBULIN ALPHA CHAINcoord: 1..346
NoneNo IPR availableCDDcd02186alpha_tubulincoord: 2..346
e-value: 0.0
score: 680.801
IPR013838Beta tubulin, autoregulation binding sitePROSITEPS00228TUBULIN_B_AUTOREGcoord: 1..4
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 142..148
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 246..346

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G12789.T1Cucsat.G12789.T1mRNA
Cucsat.G12789.T2Cucsat.G12789.T2mRNA
Cucsat.G12789.T5Cucsat.G12789.T5mRNA
Cucsat.G12789.T4Cucsat.G12789.T4mRNA
Cucsat.G12789.T3Cucsat.G12789.T3mRNA
Cucsat.G12789.T6Cucsat.G12789.T6mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton