Cucsat.G12011.T2 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12011.T2
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationctg1820: 4897655 .. 4898546 (-)
RNA-Seq ExpressionCucsat.G12011.T2
SyntenyCucsat.G12011.T2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGCCGGACCGGAATGTTTGTAAAGGTCGGTCCTTTACAAATGTTCAAACAATGCATTCCTCTATCGTTGCTAAGCCCTTTTCACGTTTGTGTTTCCCTATTTTGATTTCCTCTCTTTCTGCTTTCAACTCCCCCACTACTACATTCTTCAATCCCTGTTCTTCTCAAGGTCTCTGCTACCTTGCCCACCAACTGTTCGATGAATTGCCTCAAACAGATATTCCTTCCCTTAATTCCCTTCTCACCTCCTATGTGCGTGGCTGTCGTCAATCTGACGCATGGTCTCTCTTCAGTCGAATGCACCGCTCCTTCTCTCCTCTCACTGCCCACACTCTCACCGCTGTCTTGGCTGCATGCTCCGCATTACCCACCTCCCAATATGGCCAACTAGTCCATGGGTTAATCATAAAAACAGGTGCGTATTCTGGGATTGTAACTAAAACTGCCATCTTGGACATGTACTCTAAATGTGGACTTCTTGATGACTCTGTTAAGGTCTTTGAAGAGATGGAAATGAGGGACGTGGTTGCTTGGAATTCGTTGTTATCTAGCTTTTTGAGGGAGGGTCTTGCTGAGGAAGCATTAAACGTGTTTGAAGAAATGAAGAGAGAGAAAGTGGAGTTTAGTGAGTTTACTTTGTGTTCTGTGCTTAAAGCTTGTGCTGCCTTGGAAGATTATCGTTTGGGTAAGCAAGTTCATGGGGTGGTTGTAGTGATGAACAGAGATATGCTTGTTTTGGGTACCGCCTTGGTTGATTTTTACTCTAGTGTTGGGTGTATTAGTGAAGCCGTGAAAGTTTACACTAGCTTAAATTGTAGAAAGGATGATATCATACTTAATTCTTTAATTTCTGGATGTGTTAGGAATAAAAGATATGAAGAGGCTTTTTCA

Coding sequence (CDS)

CTGCCGGACCGGAATGTTTGTAAAGGTCGGTCCTTTACAAATGTTCAAACAATGCATTCCTCTATCGTTGCTAAGCCCTTTTCACGTTTGTGTTTCCCTATTTTGATTTCCTCTCTTTCTGCTTTCAACTCCCCCACTACTACATTCTTCAATCCCTGTTCTTCTCAAGGTCTCTGCTACCTTGCCCACCAACTGTTCGATGAATTGCCTCAAACAGATATTCCTTCCCTTAATTCCCTTCTCACCTCCTATGTGCGTGGCTGTCGTCAATCTGACGCATGGTCTCTCTTCAGTCGAATGCACCGCTCCTTCTCTCCTCTCACTGCCCACACTCTCACCGCTGTCTTGGCTGCATGCTCCGCATTACCCACCTCCCAATATGGCCAACTAGTCCATGGGTTAATCATAAAAACAGGTGCGTATTCTGGGATTGTAACTAAAACTGCCATCTTGGACATGTACTCTAAATGTGGACTTCTTGATGACTCTGTTAAGGTCTTTGAAGAGATGGAAATGAGGGACGTGGTTGCTTGGAATTCGTTGTTATCTAGCTTTTTGAGGGAGGGTCTTGCTGAGGAAGCATTAAACGTGTTTGAAGAAATGAAGAGAGAGAAAGTGGAGTTTAGTGAGTTTACTTTGTGTTCTGTGCTTAAAGCTTGTGCTGCCTTGGAAGATTATCGTTTGGGAATAAAAGATATGAAGAGGCTTTTT

Protein sequence

LPDRNVCKGRSFTNVQTMHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLGIKDMKRLF
Homology
[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match: Q9FJY9 (Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E38 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = 0 

Query: 62  AHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSA 121
           A  LFDELPQ D+ SLNS L+S++R    +D  +LF ++HR+   L++HT T VL ACS 
Sbjct: 37  ADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHRASPDLSSHTFTPVLGACSL 96

Query: 122 LPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSL 181
           L   + G+ VH L+IK GA +G ++KTA++DMYSK G L DSV+VFE +E +D+V+WN+L
Sbjct: 97  LSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNAL 156

Query: 182 LSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLG 230
           LS FLR G  +EAL VF  M RE+VE SEFTL SV+K CA+L+  + G
Sbjct: 157 LSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQG 204

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 67/168 (39.88%), Postives = 104/168 (61.90%), Query Frame = 0 

Query: 62  AHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSA 121
           A  LF  +P+ D  + NS+++ + +  R  +A   F+ MH+    L  ++  +VL+ACS 
Sbjct: 105 ADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSG 164

Query: 122 LPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSL 181
           L     G  VH LI K+   S +   +A++DMYSKCG ++D+ +VF+EM  R+VV+WNSL
Sbjct: 165 LNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSL 224

Query: 182 LSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLG 230
           ++ F + G A EAL+VF+ M   +VE  E TL SV+ ACA+L   ++G
Sbjct: 225 ITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match: Q9LRV9 (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-24
Identity = 59/159 (37.11%), Postives = 88/159 (55.35%), Query Frame = 0 

Query: 62  AHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSA 121
           A QLFD +P+ +I S NSL++ Y +      A  LF     +   L   T    L  C  
Sbjct: 101 ARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGE 160

Query: 122 LPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSL 181
                 G+L+HGL++  G    +     ++DMYSKCG LD ++ +F+  + RD V+WNSL
Sbjct: 161 RCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSL 220

Query: 182 LSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKAC 221
           +S ++R G AEE LN+  +M R+ +  + + L SVLKAC
Sbjct: 221 ISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKAC 259

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match: Q9FGL1 (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-23
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 0 

Query: 62  AHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSA 121
           AH++FDE+P  D+ S NSL++ YV+  R  +   LF  +HRS       + TA LAAC+ 
Sbjct: 109 AHKVFDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACAR 168

Query: 122 LPTSQYGQLVHGLIIKTGAYSG-IVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNS 181
           L  S  G  +H  ++K G   G +V    ++DMY KCG +DD+V VF+ ME +D V+WN+
Sbjct: 169 LHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNA 228

Query: 182 LLSSFLREGLAEEALNVFEEM 202
           +++S  R G  E  L  F +M
Sbjct: 229 IVASCSRNGKLELGLWFFHQM 249

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-23
Identity = 59/161 (36.65%), Postives = 94/161 (58.39%), Query Frame = 0 

Query: 62  AHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRS-FSPLTAHTLTAVLAACS 121
           A +LFDE P+  +PS N++++ Y +     DA SLF  M +S FSP    T+T +L+AC+
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP-NPVTITCILSACA 432

Query: 122 ALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNS 181
            L     G+ VH L+  T   S I   TA++ MY+KCG + ++ ++F+ M  ++ V WN+
Sbjct: 433 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 492

Query: 182 LLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACA 222
           ++S +   G  +EALN+F EM    +  +  T   VL AC+
Sbjct: 493 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532

[Close]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match: XP_004146551.1 (pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis sativus] >KGN53295.1 hypothetical protein Csa_014387 [Cucumis sativus])

HSP 1 Score: 422 bits (1086), Expect = 1.14e-143
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 18  MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 77
           MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL
Sbjct: 1   MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 60

Query: 78  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 137
           NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK
Sbjct: 61  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 120

Query: 138 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 197
           TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV
Sbjct: 121 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 180

Query: 198 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           FEEMKREKVEFSEFTLCSVLKACAALEDYRLG
Sbjct: 181 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 212

[Close]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match: XP_008452095.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >XP_008452096.1 PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >XP_008452097.1 PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >XP_008452099.1 PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >XP_016901139.1 PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >XP_016901140.1 PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis melo] >TYK16676.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 387 bits (993), Expect = 1.31e-129
Identity = 196/212 (92.45%), Postives = 201/212 (94.81%), Query Frame = 0 

Query: 18  MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 77
           M SS VAKPFSRLCFPILISSLSAFNSPTT+F NPCSSQGLCYLAH LFDE PQTDIPSL
Sbjct: 1   MISSFVAKPFSRLCFPILISSLSAFNSPTTSF-NPCSSQGLCYLAHHLFDEFPQTDIPSL 60

Query: 78  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 137
           N  LTSYVR CRQSDAWSLF RMHRSFSPLTAHTLTAVLAACSALPTS+YG+LVHGLIIK
Sbjct: 61  NCRLTSYVRSCRQSDAWSLFCRMHRSFSPLTAHTLTAVLAACSALPTSEYGRLVHGLIIK 120

Query: 138 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 197
           TGAY GIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV
Sbjct: 121 TGAYPGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 180

Query: 198 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           F EMKREK+EFSEFTLCSVLKACAALED+RLG
Sbjct: 181 FVEMKREKMEFSEFTLCSVLKACAALEDFRLG 211

[Close]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match: KAA0044788.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 379 bits (974), Expect = 5.79e-122
Identity = 192/208 (92.31%), Postives = 197/208 (94.71%), Query Frame = 0 

Query: 22  IVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSLNSLL 81
           I A PFSRLCFPILISSLSAFNSPTT+F NPCSSQGLCYLAH LFDE PQTDIPSLN  L
Sbjct: 430 IQALPFSRLCFPILISSLSAFNSPTTSF-NPCSSQGLCYLAHHLFDEFPQTDIPSLNCRL 489

Query: 82  TSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIKTGAY 141
           TSYVR CRQSDAWSLF RMHRSFSPLTAHTLTAVLAACSALPTS+YG+LVHGLIIKTGAY
Sbjct: 490 TSYVRSCRQSDAWSLFCRMHRSFSPLTAHTLTAVLAACSALPTSEYGRLVHGLIIKTGAY 549

Query: 142 SGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFEEM 201
            GIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVF EM
Sbjct: 550 PGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFVEM 609

Query: 202 KREKVEFSEFTLCSVLKACAALEDYRLG 229
           KREK+EFSEFTLCSVLKACAALED+RLG
Sbjct: 610 KREKMEFSEFTLCSVLKACAALEDFRLG 636

[Close]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match: KAG7015318.1 (Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351 bits (900), Expect = 1.24e-110
Identity = 181/232 (78.02%), Postives = 195/232 (84.05%), Query Frame = 0 

Query: 3   DRNVCKGRSFTNVQTMHSSI-----VAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQG 62
           DRN+ +G  FTNVQ M S I     V  PFSR C PILI SLS+ NS TT+F NPC S  
Sbjct: 459 DRNISEGEFFTNVQAMRSPIIKSLYVTNPFSRFCLPILIPSLSSLNSATTSF-NPCCSDS 518

Query: 63  LCYLAHQLFDELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLA 122
            C LAHQLFD+LPQ DIPSL S+LTSYVRG R SDAWSLF +MHRS SP+TAHTLTA LA
Sbjct: 519 FCSLAHQLFDKLPQRDIPSLTSILTSYVRGHRHSDAWSLFRQMHRSCSPVTAHTLTAALA 578

Query: 123 ACSALPTSQYGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVA 182
           ACSALPTS YGQ VHGLIIKTG YSGIVTKTAILDMYSKCGLLD SVKVFEEME++DVVA
Sbjct: 579 ACSALPTSDYGQQVHGLIIKTGTYSGIVTKTAILDMYSKCGLLDHSVKVFEEMELKDVVA 638

Query: 183 WNSLLSSFLREGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           WN+LLSSFLREGLA EALNVFEEMKREKVE SEFTLCSVLKACAAL+D++LG
Sbjct: 639 WNALLSSFLREGLAGEALNVFEEMKREKVECSEFTLCSVLKACAALKDFQLG 689

[Close]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match: XP_038901893.1 (pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Benincasa hispida])

HSP 1 Score: 338 bits (867), Expect = 3.34e-110
Identity = 180/223 (80.72%), Postives = 191/223 (85.65%), Query Frame = 0 

Query: 12  FTNVQTMHSSIV-----AKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLF 71
           FTNVQ M S IV     + PFSRLC PI ISS SA NS  T+F +PC S+GLC LA QLF
Sbjct: 25  FTNVQAMRSPIVKPLYVSNPFSRLCLPISISSRSALNSHPTSF-HPCYSEGLCSLARQLF 84

Query: 72  DELPQTDIPSLNSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQ 131
           DELPQ DIPSLNSLL S+VRG R SDAWSLF RMHRS S LTAHTLTA LAACSALPTS 
Sbjct: 85  DELPQRDIPSLNSLLISFVRGYRHSDAWSLFCRMHRS-SALTAHTLTAALAACSALPTSG 144

Query: 132 YGQLVHGLIIKTGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFL 191
           YGQ VHGLIIK+  YSGI+TKTAILDMYSKCGLLDDSVKVFEEME+RDVVAWN+LLSSFL
Sbjct: 145 YGQQVHGLIIKSDTYSGIITKTAILDMYSKCGLLDDSVKVFEEMEVRDVVAWNALLSSFL 204

Query: 192 REGLAEEALNVFEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           REGLAEEALNVFEEMKREKV FSEFTLCSVLKACAAL+D+RLG
Sbjct: 205 REGLAEEALNVFEEMKREKVVFSEFTLCSVLKACAALKDFRLG 245

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match: A0A0A0KUI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046580 PE=4 SV=1)

HSP 1 Score: 422 bits (1086), Expect = 5.50e-144
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0 

Query: 18  MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 77
           MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL
Sbjct: 1   MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 60

Query: 78  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 137
           NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK
Sbjct: 61  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 120

Query: 138 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 197
           TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV
Sbjct: 121 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 180

Query: 198 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           FEEMKREKVEFSEFTLCSVLKACAALEDYRLG
Sbjct: 181 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 212

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match: A0A1S3BTV7 (pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493206 PE=4 SV=1)

HSP 1 Score: 387 bits (993), Expect = 6.32e-130
Identity = 196/212 (92.45%), Postives = 201/212 (94.81%), Query Frame = 0 

Query: 18  MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 77
           M SS VAKPFSRLCFPILISSLSAFNSPTT+F NPCSSQGLCYLAH LFDE PQTDIPSL
Sbjct: 1   MISSFVAKPFSRLCFPILISSLSAFNSPTTSF-NPCSSQGLCYLAHHLFDEFPQTDIPSL 60

Query: 78  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 137
           N  LTSYVR CRQSDAWSLF RMHRSFSPLTAHTLTAVLAACSALPTS+YG+LVHGLIIK
Sbjct: 61  NCRLTSYVRSCRQSDAWSLFCRMHRSFSPLTAHTLTAVLAACSALPTSEYGRLVHGLIIK 120

Query: 138 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 197
           TGAY GIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV
Sbjct: 121 TGAYPGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 180

Query: 198 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           F EMKREK+EFSEFTLCSVLKACAALED+RLG
Sbjct: 181 FVEMKREKMEFSEFTLCSVLKACAALEDFRLG 211

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match: A0A5D3D1V2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005070 PE=4 SV=1)

HSP 1 Score: 387 bits (993), Expect = 6.32e-130
Identity = 196/212 (92.45%), Postives = 201/212 (94.81%), Query Frame = 0 

Query: 18  MHSSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSL 77
           M SS VAKPFSRLCFPILISSLSAFNSPTT+F NPCSSQGLCYLAH LFDE PQTDIPSL
Sbjct: 1   MISSFVAKPFSRLCFPILISSLSAFNSPTTSF-NPCSSQGLCYLAHHLFDEFPQTDIPSL 60

Query: 78  NSLLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIK 137
           N  LTSYVR CRQSDAWSLF RMHRSFSPLTAHTLTAVLAACSALPTS+YG+LVHGLIIK
Sbjct: 61  NCRLTSYVRSCRQSDAWSLFCRMHRSFSPLTAHTLTAVLAACSALPTSEYGRLVHGLIIK 120

Query: 138 TGAYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 197
           TGAY GIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV
Sbjct: 121 TGAYPGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNV 180

Query: 198 FEEMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           F EMKREK+EFSEFTLCSVLKACAALED+RLG
Sbjct: 181 FVEMKREKMEFSEFTLCSVLKACAALEDFRLG 211

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match: A0A5A7TPH0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00790 PE=3 SV=1)

HSP 1 Score: 379 bits (974), Expect = 2.80e-122
Identity = 192/208 (92.31%), Postives = 197/208 (94.71%), Query Frame = 0 

Query: 22  IVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSLNSLL 81
           I A PFSRLCFPILISSLSAFNSPTT+F NPCSSQGLCYLAH LFDE PQTDIPSLN  L
Sbjct: 430 IQALPFSRLCFPILISSLSAFNSPTTSF-NPCSSQGLCYLAHHLFDEFPQTDIPSLNCRL 489

Query: 82  TSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIKTGAY 141
           TSYVR CRQSDAWSLF RMHRSFSPLTAHTLTAVLAACSALPTS+YG+LVHGLIIKTGAY
Sbjct: 490 TSYVRSCRQSDAWSLFCRMHRSFSPLTAHTLTAVLAACSALPTSEYGRLVHGLIIKTGAY 549

Query: 142 SGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFEEM 201
            GIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVF EM
Sbjct: 550 PGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFVEM 609

Query: 202 KREKVEFSEFTLCSVLKACAALEDYRLG 229
           KREK+EFSEFTLCSVLKACAALED+RLG
Sbjct: 610 KREKMEFSEFTLCSVLKACAALEDFRLG 636

[Close]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match: A0A6J1JAF9 (pentatricopeptide repeat-containing protein At5g66500, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482726 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 1.32e-108
Identity = 170/210 (80.95%), Postives = 181/210 (86.19%), Query Frame = 0 

Query: 20  SSIVAKPFSRLCFPILISSLSAFNSPTTTFFNPCSSQGLCYLAHQLFDELPQTDIPSLNS 79
           S  V  PFSR C PI I S SA NS TT+F NPC S+  C  AHQLFDELPQ DIPSL S
Sbjct: 8   SLYVTNPFSRFCLPISIPSFSALNSATTSF-NPCCSESFCSHAHQLFDELPQRDIPSLTS 67

Query: 80  LLTSYVRGCRQSDAWSLFSRMHRSFSPLTAHTLTAVLAACSALPTSQYGQLVHGLIIKTG 139
           LLTSYVRG R SDAWSLF +MHRS SPLTAHTLTA LAACSALPTS YGQ VHGLIIKTG
Sbjct: 68  LLTSYVRGHRHSDAWSLFRQMHRSCSPLTAHTLTAALAACSALPTSDYGQQVHGLIIKTG 127

Query: 140 AYSGIVTKTAILDMYSKCGLLDDSVKVFEEMEMRDVVAWNSLLSSFLREGLAEEALNVFE 199
            YSGIVTKTAILDMYSKCGLLD SVKVFEEME++DVVAWN+LLSSFLREGLA +ALNVFE
Sbjct: 128 TYSGIVTKTAILDMYSKCGLLDHSVKVFEEMELKDVVAWNALLSSFLREGLAGKALNVFE 187

Query: 200 EMKREKVEFSEFTLCSVLKACAALEDYRLG 229
           EMKREKVE+SEFTLCSVLKACAAL+D++LG
Sbjct: 188 EMKREKVEYSEFTLCSVLKACAALKDFQLG 216

The following BLAST results are available for this feature:
BLAST of Cucsat.G12011.T2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJY91.4e-4253.57Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidop... [more]
Q9SIT71.3e-2739.88Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX... [more]
Q9LRV91.4e-2437.11Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana OX... [more]
Q9FGL12.0e-2340.43Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis th... [more]
Q9SUH65.7e-2336.65Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX... [more]
BLAST of Cucsat.G12011.T2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146551.11.14e-143100.00pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Cucumis sa... [more]
XP_008452095.11.31e-12992.45PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial ... [more]
KAA0044788.15.79e-12292.31pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
KAG7015318.11.24e-11078.02Pentatricopeptide repeat-containing protein, mitochondrial [Cucurbita argyrosper... [more]
XP_038901893.13.34e-11080.72pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Benincasa ... [more]
BLAST of Cucsat.G12011.T2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUI35.50e-144100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046580 PE=4 SV=1[more]
A0A1S3BTV76.32e-13092.45pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Cucumis ... [more]
A0A5D3D1V26.32e-13092.45Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TPH02.80e-12292.31Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1JAF91.32e-10880.95pentatricopeptide repeat-containing protein At5g66500, mitochondrial isoform X1 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 146..176
e-value: 5.0E-4
score: 18.1
coord: 176..207
e-value: 1.6E-7
score: 29.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 173..221
e-value: 1.1E-13
score: 51.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 12.156139
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 75..237
e-value: 1.9E-31
score: 111.6
NoneNo IPR availablePANTHERPTHR47925OS01G0913400 PROTEIN-RELATEDcoord: 54..229
NoneNo IPR availablePANTHERPTHR47925:SF41SUBFAMILY NOT NAMEDcoord: 54..229

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12011Cucsat.G12011gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12011.T2.E1Cucsat.G12011.T2.E1exon
Cucsat.G12011.T2.E2Cucsat.G12011.T2.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12011.T2.C2Cucsat.G12011.T2.C2CDS
Cucsat.G12011.T2.C1Cucsat.G12011.T2.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12011.T2Cucsat.G12011.T2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003723 RNA binding