Csor.00g309320.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g309320.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr01: 6900626 .. 6902692 (-)
Sequence length1032
RNA-Seq ExpressionCsor.00g309320.m01
SyntenyCsor.00g309320.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAGTTGGACACATCTTTAGAAGGAAAAACTTTCCCTCTCTTAGCATGTGATATCTCACATTGGGTGGAGAGGAGAACGAAACACCTTTTAGCATGTGATATCTCACATTGGGTGGAGAGGAGAACGAAACACCTTTTATAAAAATGTGGAAACCTTTCCTTAGGAGACATTTAGTCCAAAAAGAACAATATCTACCGCGTATTTTGGCTTGAACTTCTTGTTTTTCTCTTATTTTTTCAATGCTACAATTTATCTTCCATATTATGCACTAATCTTATCACCCTCAAACTATATTAAGTCGGTAAGCTTTCAATTTCATCTCAAACATATTATAAAATTTCAAATTTTAATATTGCTATGGGTTAAATTGAAAGGTAAGGAAAGATATAAAGTAAAATCAAATAAAATAAACTTAAATATGAAGTCTCCGCTACCACACAAGTAAAAATAAAAAATAAAAATAAATAAATAAATAAAAATTGCATACCCTTGCTTCGCTTAAACATAGTTGGAATGTGAAGGTACATAAAAATAATATATGTTATATAATTTATTAGAGGCACATAAAAATACTTTTTCAATAATATATGTTATATATGTAATTGGACGAAATTAAAATTGTTTTTTTTCTTCCCACTTATTTAACATAAAATAAATACATTTCATTCTTAATTAAGTTTATGATAATTATTACATAAATTAATAAATAAGTAATTAAGTACGGAGATTTTTTTAATTTTTTTAATATACTTTCCTTGTTCCTATTATTTGAACAAGCATGTTTTTTAGGGAAAAAAAAAAGGAAAGAAAAGGAAAAAGTGTGTGCCAAAATATTTTCCTTTTAAGACTTAAAAGGGCGATACTCATTAAAATTAATTGATTTTTTTGTCAAAATATTTTCCAATTGTGTTTGGGTGGAATTATGGGAAGATTTTAGATGATTTGTATTTTTTATTCCCATAACTGAAAAATTCCAAAGGGGCGAATGGTGGAAAGGTGAAGCATATAAATGAAGCACTTCATGATGTTCCTCGTAGACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

mRNA sequence

ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

Coding sequence (CDS)

ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

Protein sequence

MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYLEHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHNTQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPSSDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLVQELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL
Homology
[Close]
BLAST of Csor.00g309320.m01 vs. NCBI nr
Match: KAG6607616.1 (hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 684 bits (1766), Expect = 2.54e-248
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0 

Query: 1   MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH 60
           MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH
Sbjct: 1   MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH 60

Query: 61  KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL 120
           KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL
Sbjct: 61  KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL 120

Query: 121 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN
Sbjct: 121 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180

Query: 181 TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS 240
           TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS
Sbjct: 181 TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS 240

Query: 241 SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV 300
           SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV
Sbjct: 241 SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV 300

Query: 301 QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL 343
           QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL
Sbjct: 301 QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL 343

[Close]
BLAST of Csor.00g309320.m01 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 1.50e-11
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = 0 

Query: 19  GKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYC 78
            K+    WS  DE ++L+   EF G++ S   Y+  FY+ V  KLSVD+  +QL   +Y 
Sbjct: 57  SKKMGFHWSWSDECVILKNFYEFAGKNGS---YSKDFYHFVKNKLSVDVSNSQLSDKVYR 116

Query: 79  LRKQYLENE-------KNSDRDDL-KVVELSAKLWEVDTKT----------KVVSDDYYL 138
           LRK++L++E       K S  + L K+ E+S  +W  ++ T          K  + +   
Sbjct: 117 LRKRFLKDECKGKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLC 176

Query: 139 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           E +   V++ + +   C+   V+  I++DW++ ++ +DE+    A   LQ+  +    +N
Sbjct: 177 EEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIRCTQNN 233

[Close]
BLAST of Csor.00g309320.m01 vs. NCBI nr
Match: XP_038877618.1 (STOREKEEPER protein-like [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 7.72e-07
Identity = 46/187 (24.60%), Postives = 87/187 (46.52%), Query Frame = 0 

Query: 26  WSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYCLRKQYLE 85
           WS  DE  +LE   EF G  K+ NY +  FY+ V  KLS ++  +QL   +Y LRK++++
Sbjct: 15  WSSTDECTILENFYEFAG--KNGNY-SKAFYHFVKGKLSGEVSNSQLSTKVYRLRKRFMK 74

Query: 86  NEKNSDRD--------DLKVVELSAKLWEVDTKTKVVS---------------------- 145
           N++N + +        D KV ELS  +W  D +    +                      
Sbjct: 75  NKRNDNNNNNMREKFPDEKVFELSRNIWGDDQENPKSTIGGGGPSSSSSINIIQWKPEEV 134

Query: 146 DDYYLEHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELA 182
           + +Y +  K+++ + + +    + + V+E ++++W++ R   +++    A     L E  
Sbjct: 135 ERFYEKRFKIFL-ENMKLDVTSIPTHVLEDVRKEWEDVRRARNDYELKNA----DLLEEI 193

[Close]
BLAST of Csor.00g309320.m01 vs. ExPASy TrEMBL
Match: A0A6J1DXL5 (probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111025442 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.24e-12
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = 0 

Query: 19  GKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYC 78
            K+    WS  DE ++L+   EF G++ S   Y+  FY+ V  KLSVD+  +QL   +Y 
Sbjct: 57  SKKMGFHWSWSDECVILKNFYEFAGKNGS---YSKDFYHFVKNKLSVDVSNSQLSDKVYR 116

Query: 79  LRKQYLENE-------KNSDRDDL-KVVELSAKLWEVDTKT----------KVVSDDYYL 138
           LRK++L++E       K S  + L K+ E+S  +W  ++ T          K  + +   
Sbjct: 117 LRKRFLKDECKGKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLC 176

Query: 139 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           E +   V++ + +   C+   V+  I++DW++ ++ +DE+    A   LQ+  +    +N
Sbjct: 177 EEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIRCTQNN 233

The following BLAST results are available for this feature:
BLAST of Csor.00g309320.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g309320.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607616.12.54e-248100.00hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022158998.11.50e-1127.22probable transcription factor At4g01260 [Momordica charantia][more]
XP_038877618.17.72e-0724.60STOREKEEPER protein-like [Benincasa hispida][more]
BLAST of Csor.00g309320.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXL57.24e-1227.22probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111... [more]
BLAST of Csor.00g309320.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 242..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..266
NoneNo IPR availablePANTHERPTHR31662:SF33STOREKEEPER PROTEINcoord: 26..160
IPR007592GLABROUS1 enhancer-binding protein familyPFAMPF04504DUF573coord: 26..105
e-value: 2.0E-10
score: 41.2
IPR007592GLABROUS1 enhancer-binding protein familyPANTHERPTHR31662BNAANNG10740D PROTEIN-RELATEDcoord: 26..160

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g309320Csor.00g309320gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.CDS02Csor.00g309320.m01.CDS02CDS
Csor.00g309320.m01.CDS01Csor.00g309320.m01.CDS01CDS


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.terminal01Csor.00g309320.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.stop_codon01Csor.00g309320.m01.stop_codon01stop_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.intron01Csor.00g309320.m01.intron01intron


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.initial01Csor.00g309320.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01.start_codon01Csor.00g309320.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g309320.m01Csor.00g309320.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated