Csor.00g309320 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g309320
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 6900626 .. 6902692 (-)
RNA-Seq Expression	Csor.00g309320
Synteny	Csor.00g309320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAGTTGGACACATCTTTAGAAGGAAAAACTTTCCCTCTCTTAGCATGTGATATCTCACATTGGGTGGAGAGGAGAACGAAACACCTTTTAGCATGTGATATCTCACATTGGGTGGAGAGGAGAACGAAACACCTTTTATAAAAATGTGGAAACCTTTCCTTAGGAGACATTTAGTCCAAAAAGAACAATATCTACCGCGTATTTTGGCTTGAACTTCTTGTTTTTCTCTTATTTTTTCAATGCTACAATTTATCTTCCATATTATGCACTAATCTTATCACCCTCAAACTATATTAAGTCGGTAAGCTTTCAATTTCATCTCAAACATATTATAAAATTTCAAATTTTAATATTGCTATGGGTTAAATTGAAAGGTAAGGAAAGATATAAAGTAAAATCAAATAAAATAAACTTAAATATGAAGTCTCCGCTACCACACAAGTAAAAATAAAAAATAAAAATAAATAAATAAATAAAAATTGCATACCCTTGCTTCGCTTAAACATAGTTGGAATGTGAAGGTACATAAAAATAATATATGTTATATAATTTATTAGAGGCACATAAAAATACTTTTTCAATAATATATGTTATATATGTAATTGGACGAAATTAAAATTGTTTTTTTTCTTCCCACTTATTTAACATAAAATAAATACATTTCATTCTTAATTAAGTTTATGATAATTATTACATAAATTAATAAATAAGTAATTAAGTACGGAGATTTTTTTAATTTTTTTAATATACTTTCCTTGTTCCTATTATTTGAACAAGCATGTTTTTTAGGGAAAAAAAAAAGGAAAGAAAAGGAAAAAGTGTGTGCCAAAATATTTTCCTTTTAAGACTTAAAAGGGCGATACTCATTAAAATTAATTGATTTTTTTGTCAAAATATTTTCCAATTGTGTTTGGGTGGAATTATGGGAAGATTTTAGATGATTTGTATTTTTTATTCCCATAACTGAAAAATTCCAAAGGGGCGAATGGTGGAAAGGTGAAGCATATAAATGAAGCACTTCATGATGTTCCTCGTAGACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

mRNA sequence

ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

Coding sequence (CDS)

ATGAAACACAATAGTTATGAAGCCCCCACATGTGTGGAGTTGAATAAGATACTAGGGAAACAATATTCATTAGGATGGAGCAAAAGGGATGAAGTAATTGTTCTTGAGAAGCTATGTGAATTTGAAGGGCAACATAAGAGTGCTAATTACTACACATCCCAATTCTATAACTCTGTCCACAAGAAGCTAAGTGTTGATATCCCACAGAATCAATTGTGTTACATGATATATTGTCTACGAAAACAATATTTAGAAAATGAAAAGAATTCGGATCGTGATGATCTCAAAGTTGTGGAATTATCAGCCAAATTATGGGAAGTTGATACCAAAACAAAGGTAGTGAGTGATGATTATTATTTGGAGCACTTGAAAGTTTATGTTGTTCAAGTTCTAGGGATTGGCGCAGATTGCTTGACGAGTTGTGTTGTTGAGAAAATTAAGGAAGATTGGAAAGAGTTTCGATTGGTTGAAGATGAGTTTCGATCGATACAGGCAAGGTTTAATTTGCAACTTTGTGAGTTGGCGGGTGACATGCACAACACACAACTTGAAACTCCGATTCCAATGGAAGAATTAGGGAACATTGAAGACCTAGTGGTTGCTGATTCCTATGACTCACAAGAAGAACAAGAATGTTATTTCATAATTCGCAATAATACAGCTACTTCCTCACTCTCTCTTCCCTCTCACCCGCCTCAAGCAACAACTCTACCACCCTCCTCGGACCAGAATTCTTACAAGAGGGCCGAACAAGAACAAGAACAAGAACAAGAACTAGAAGAAGAAGAACCCGAAGAAGAAGAAGCGTGTTGTTTCAAGTTCTATGAGGAGTGGTTTCATGAGTTTGTTAGTAAACATGGGCTCGACATGAAGCATTTGGATGTGAATCACTCGTTAGTGCAAGAATTAGAGAAATTATGGGTGAAAAGACAAGTGGCTGCTGCTCAAATGCGTTCCAAGGAGGCTGAAATTGATATCAACTTAATCAACACCAGATATGCTATTTGCAAACAATGGCTTTCTTCCTTATAA

Protein sequence

MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYLEHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHNTQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPSSDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLVQELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL

Homology

[Close]

BLAST of Csor.00g309320 vs. NCBI nr
Match: KAG6607616.1 (hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 684 bits (1766), Expect = 2.54e-248
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH 60
           MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH
Sbjct: 1   MKHNSYEAPTCVELNKILGKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVH 60

Query: 61  KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL 120
           KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL
Sbjct: 61  KKLSVDIPQNQLCYMIYCLRKQYLENEKNSDRDDLKVVELSAKLWEVDTKTKVVSDDYYL 120

Query: 121 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN
Sbjct: 121 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180

Query: 181 TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS 240
           TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS
Sbjct: 181 TQLETPIPMEELGNIEDLVVADSYDSQEEQECYFIIRNNTATSSLSLPSHPPQATTLPPS 240

Query: 241 SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV 300
           SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV
Sbjct: 241 SDQNSYKRAEQEQEQEQELEEEEPEEEEACCFKFYEEWFHEFVSKHGLDMKHLDVNHSLV 300

Query: 301 QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL 343
           QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL
Sbjct: 301 QELEKLWVKRQVAAAQMRSKEAEIDINLINTRYAICKQWLSSL 343

[Close]

BLAST of Csor.00g309320 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 1.50e-11
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = 0


Query: 19  GKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYC 78
            K+    WS  DE ++L+   EF G++ S   Y+  FY+ V  KLSVD+  +QL   +Y 
Sbjct: 57  SKKMGFHWSWSDECVILKNFYEFAGKNGS---YSKDFYHFVKNKLSVDVSNSQLSDKVYR 116

Query: 79  LRKQYLENE-------KNSDRDDL-KVVELSAKLWEVDTKT----------KVVSDDYYL 138
           LRK++L++E       K S  + L K+ E+S  +W  ++ T          K  + +   
Sbjct: 117 LRKRFLKDECKGKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLC 176

Query: 139 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           E +   V++ + +   C+   V+  I++DW++ ++ +DE+    A   LQ+  +    +N
Sbjct: 177 EEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIRCTQNN 233

[Close]

BLAST of Csor.00g309320 vs. NCBI nr
Match: XP_038877618.1 (STOREKEEPER protein-like [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 7.72e-07
Identity = 46/187 (24.60%), Postives = 87/187 (46.52%), Query Frame = 0


Query: 26  WSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYCLRKQYLE 85
           WS  DE  +LE   EF G  K+ NY +  FY+ V  KLS ++  +QL   +Y LRK++++
Sbjct: 15  WSSTDECTILENFYEFAG--KNGNY-SKAFYHFVKGKLSGEVSNSQLSTKVYRLRKRFMK 74

Query: 86  NEKNSDRD--------DLKVVELSAKLWEVDTKTKVVS---------------------- 145
           N++N + +        D KV ELS  +W  D +    +                      
Sbjct: 75  NKRNDNNNNNMREKFPDEKVFELSRNIWGDDQENPKSTIGGGGPSSSSSINIIQWKPEEV 134

Query: 146 DDYYLEHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELA 182
           + +Y +  K+++ + + +    + + V+E ++++W++ R   +++    A     L E  
Sbjct: 135 ERFYEKRFKIFL-ENMKLDVTSIPTHVLEDVRKEWEDVRRARNDYELKNA----DLLEEI 193

[Close]

BLAST of Csor.00g309320 vs. ExPASy TrEMBL
Match: A0A6J1DXL5 (probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111025442 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.24e-12
Identity = 49/180 (27.22%), Postives = 90/180 (50.00%), Query Frame = 0


Query: 19  GKQYSLGWSKRDEVIVLEKLCEFEGQHKSANYYTSQFYNSVHKKLSVDIPQNQLCYMIYC 78
            K+    WS  DE ++L+   EF G++ S   Y+  FY+ V  KLSVD+  +QL   +Y 
Sbjct: 57  SKKMGFHWSWSDECVILKNFYEFAGKNGS---YSKDFYHFVKNKLSVDVSNSQLSDKVYR 116

Query: 79  LRKQYLENE-------KNSDRDDL-KVVELSAKLWEVDTKT----------KVVSDDYYL 138
           LRK++L++E       K S  + L K+ E+S  +W  ++ T          K  + +   
Sbjct: 117 LRKRFLKDECKGKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQNTQSGGNQWKAEAVNRLC 176

Query: 139 EHLKVYVVQVLGIGADCLTSCVVEKIKEDWKEFRLVEDEFRSIQARFNLQLCELAGDMHN 180
           E +   V++ + +   C+   V+  I++DW++ ++ +DE+    A   LQ+  +    +N
Sbjct: 177 EEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIRCTQNN 233

The following BLAST results are available for this feature:

BLAST of Csor.00g309320 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g309320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607616.1	2.54e-248	100.00	hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022158998.1	1.50e-11	27.22	probable transcription factor At4g01260 [Momordica charantia]	[more]
XP_038877618.1	7.72e-07	24.60	STOREKEEPER protein-like [Benincasa hispida]	[more]

BLAST of Csor.00g309320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXL5	7.24e-12	27.22	probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of Csor.00g309320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 242..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..266
None	No IPR available	PANTHER	PTHR31662:SF33	STOREKEEPER PROTEIN	coord: 26..160
IPR007592	GLABROUS1 enhancer-binding protein family	PFAM	PF04504	DUF573	coord: 26..105 e-value: 2.0E-10 score: 41.2
IPR007592	GLABROUS1 enhancer-binding protein family	PANTHER	PTHR31662	BNAANNG10740D PROTEIN-RELATED	coord: 26..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g309320.m01	Csor.00g309320.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated