Csor.00g201150.m02 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g201150.m02
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr03: 5392055 .. 5394513 (+)
Sequence length486
RNA-Seq ExpressionCsor.00g201150.m02
SyntenyCsor.00g201150.m02
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATGCCTCGTTCTTCATACCAAGATGACTCCAATTCTTCTCGATTAGGGGTTTCCACTTTTCCCCTCTTTTTGGTTCAACAGTTTCTGTACAGAAAAAATATATTAGAATCTGGTAAGATCATGCCTTTTCTTTTATTTCTTTTAATATTTCATATATATATATATAATGAAATTGAATTAAAGAACGACAGAATCAATCAAGTACCGGAGGTTTTCCAACGTTGGTTTTTACCCAGAAATGATCAGTATTGTAATTGGCCTCAGTTTATGAAACTCTCTTCCTTTGGACTCAACAAGGAAACTTTACGTGCTGATAACGAAAGTGTATTGTTTTGTGGCGGTGGTGTCATGTGTAATGCTGCTGCTTTCTTAAATATGGATTTGGTAGATCACTAGTGTACTTGTAATTAGTTGCATTCATATCGAATGGGATGCCACGGGAGGCATACCAAGTGTACGGACTGCTCTGTTGCCTGTTGTTCTAAGCTTTACGAGCATTAGTGTGATTTCAAAATATATGCAGATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGGTCTGTGGATGAAGTTATGTTGTTTGTCATTTTCATACACCACATAGGGTGCAAACATGGAGCCTTCCAACTCTGTTCGTCTCTTCCAAATTTATAATCTTCATTCTTCATCCAACCCTATCCTTTACTTTTTGCAAAAAAAGAGTTATCACCTATTTATATCGATTAGAGAGAGGAACGAATATGAGTGCGAACGTTGGATTCGGAGGGGATAGATTGTGAAATCACACGTCCGTTGGAGAAGGGAACAAACATTATTTATAAGGGTGTGAAAACCTCTTCTTAGCAGACGCGGTTTTGTAGGCTTGGGTCGTTACAAATGTTATCAGAGCAAGACACTGAGTAGTATGCCAACAAAGACGTTGGGCCTCGAAGGGGCTGGACACCGGATGGTGTACCAGCAAGGACGCTGGACCCCGAAGGGGGAAGTGAACACCGGGTAGTGTGGTAGTGTGCCAGCGAGGACGCTAGGTCTTGAAGGAGTGGACACTAGACAGTGTGCCAACGAAAACACTGAAGAGTCGGGGAGTGCTTCAAACCTTCCATAATTTCTTACTACATTTCACTCTATTAATTTCTTACAGTTTTTTTTTTGTTAGGAATGAATTCTATCAATTTAGTGTAACAAAAAAGAACCGTATCCACTTATTTTATAGTTTGATAGTTTATTGGTTGAGATTCGAGTCAAATGGGTAAATTATTGGTCAAAAAGGTTAGAAAAGTGGAGATCTATAGAAATTCTCTCTCACAGGTAGAGGCACAGAGTGGTTTCCGGGATTTGTCTATTCCATTTGGACTTCCAAAGAGAATTCAACATGGATCATTATTTGGCCCAACAGACAGAAACTGAAGGGCAATAATTTTGGCCCTTTTCCTTTGAAGGAAACAAGAAAAAGATAAGAATGAAGGGCCCACAAATGATCTATTCTGATCAAAGCAATGCCCTTCTGGTTTGTTCATTCCAAGAACAGTAGCAGAAACGGATTCAGAATTCATTCAGCTTCTTCATCACTTCATCCATTCTCAGCGCTGCAAAAAGGTGGATAGAAAGATTGAGAAGTGGTGTGGTCTTCCCCTGTTGGCAAGCAATGCTCCATTCCACATTGGTAGGCCCTCCACAAACCCATCCTTTTCTTTCCTTTTTTTTTTTTTTTTTTTCTAGTTCCATATTCCCTGTGCTTCACAAAAAGAAATGAATGGAAATAGAGCTCCACAGTACACTGATTCACACCAACTTAAGACAGAATAATGTCAAGCTTGTTTAGAGGCAATTAGTGGCCCGAATTCTGGAGGCAAGAAAGCCTAAAAGAGATGAAACAAGAAAAAAGGAGAGGGTATTGGTACTTTGTAATGATGTTATTATCAAAGCGTAAATGGGATGAAAATGAAGGGTGTGGATTAGCAAAGACTCATGAGACGCACGCTTCAAGACAAAGGCTATCCATTCCTCTTAACCTTCTGCATTACAATCTAAAACGCTTTCCATTAGACTTAATTTCATCAACTAATTGATGTGTGGGACCCCTTTTGATCACTTACCTAAACCCTTTGTTATAAAGCTTATCAACTTAACCAAACCCAAATCTCAATCTTATTTTACTCATTCATCTGCTTTTTTCTTTTCCTAAGTTGTCTTGAATTTCAGGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGGTAGTTGTTTTCTCACTCTTTTAGAAAGTGTTTTCATTCATTGAATTGATGAATTTTGGTTAATTCAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

mRNA sequence

ATGTCGATGCCTCGTTCTTCATACCAAGATGACTCCAATTCTTCTCGATTAGGGGTTTCCACTTTTCCCCTCTTTTTGGTTCAACAGTTTCTGTACAGAAAAAATATATTAGAATCTGATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGTAGCAGAAACGGATTCAGAATTCATTCAGCTTCTTCATCACTTCATCCATTCTCAGCGCTGCAAAAAGGTGGATAGAAAGATTGAGAAGTGGTGTGGTCTTCCCCTGTTGGCAAGCAATGCTCCATTCCACATTGTTGTCTTGAATTTCAGGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

Coding sequence (CDS)

ATGTCGATGCCTCGTTCTTCATACCAAGATGACTCCAATTCTTCTCGATTAGGGGTTTCCACTTTTCCCCTCTTTTTGGTTCAACAGTTTCTGTACAGAAAAAATATATTAGAATCTGATTTTGGTGGACTGGATGGATACTTCGGTGCAGCGAAGTTATTGCGTGGTAGGGCTGTGCGTGGAGGTTTGTGGTTGGAACTTGATTATTGGGTTTTGGTTGGCGTGGCCATGGGAGTAGCAGAAACGGATTCAGAATTCATTCAGCTTCTTCATCACTTCATCCATTCTCAGCGCTGCAAAAAGGTGGATAGAAAGATTGAGAAGTGGTGTGGTCTTCCCCTGTTGGCAAGCAATGCTCCATTCCACATTGTTGTCTTGAATTTCAGGTCAGGGAATCTGGACACACAGAAATCTATTACTGTGGGAACAGAATATGAGGAAAGATTGAATATTTCACCTGATGAAGAAGGGAGAGATGAAGTTTAA

Protein sequence

MSMPRSSYQDDSNSSRLGVSTFPLFLVQQFLYRKNILESDFGGLDGYFGAAKLLRGRAVRGGLWLELDYWVLVGVAMGVAETDSEFIQLLHHFIHSQRCKKVDRKIEKWCGLPLLASNAPFHIVVLNFRSGNLDTQKSITVGTEYEERLNISPDEEGRDEV
Homology
[Close]
BLAST of Csor.00g201150.m02 vs. NCBI nr
Match: KAG6603738.1 (hypothetical protein SDJN03_04347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 330 bits (845), Expect = 5.34e-114
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MSMPRSSYQDDSNSSRLGVSTFPLFLVQQFLYRKNILESDFGGLDGYFGAAKLLRGRAVR 60
           MSMPRSSYQDDSNSSRLGVSTFPLFLVQQFLYRKNILESDFGGLDGYFGAAKLLRGRAVR
Sbjct: 1   MSMPRSSYQDDSNSSRLGVSTFPLFLVQQFLYRKNILESDFGGLDGYFGAAKLLRGRAVR 60

Query: 61  GGLWLELDYWVLVGVAMGVAETDSEFIQLLHHFIHSQRCKKVDRKIEKWCGLPLLASNAP 120
           GGLWLELDYWVLVGVAMGVAETDSEFIQLLHHFIHSQRCKKVDRKIEKWCGLPLLASNAP
Sbjct: 61  GGLWLELDYWVLVGVAMGVAETDSEFIQLLHHFIHSQRCKKVDRKIEKWCGLPLLASNAP 120

Query: 121 FHIVVLNFRSGNLDTQKSITVGTEYEERLNISPDEEGRDEV 161
           FHIVVLNFRSGNLDTQKSITVGTEYEERLNISPDEEGRDEV
Sbjct: 121 FHIVVLNFRSGNLDTQKSITVGTEYEERLNISPDEEGRDEV 161

The following BLAST results are available for this feature:
BLAST of Csor.00g201150.m02 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g201150.m02 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603738.15.34e-114100.00hypothetical protein SDJN03_04347, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g201150.m02 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g201150.m02 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g201150Csor.00g201150gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.CDS01Csor.00g201150.m02.CDS01CDS
Csor.00g201150.m02.CDS02Csor.00g201150.m02.CDS02CDS
Csor.00g201150.m02.CDS03Csor.00g201150.m02.CDS03CDS
Csor.00g201150.m02.CDS04Csor.00g201150.m02.CDS04CDS
Csor.00g201150.m02.CDS05Csor.00g201150.m02.CDS05CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.start_codon01Csor.00g201150.m02.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.initial01Csor.00g201150.m02.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.intron01Csor.00g201150.m02.intron01intron
Csor.00g201150.m02.intron02Csor.00g201150.m02.intron02intron
Csor.00g201150.m02.intron03Csor.00g201150.m02.intron03intron
Csor.00g201150.m02.intron04Csor.00g201150.m02.intron04intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.internal01Csor.00g201150.m02.internal01internal
Csor.00g201150.m02.internal02Csor.00g201150.m02.internal02internal
Csor.00g201150.m02.internal03Csor.00g201150.m02.internal03internal


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.terminal01Csor.00g201150.m02.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02.stop_codon01Csor.00g201150.m02.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g201150.m02Csor.00g201150.m02-proteinpolypeptide