Csor.00g037310.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA ATGGGCAACTGTTTGCGGCGGGATGGCGCGGCGGCGCAGTGGGCCGGCGAGGAGTGGGACTTCCTAGCGGCGGAGGACGACGGCCGGGAAGGGCTTCTCGGCGAAATCGAGAAGAAAAAGAGTTCAACGGCGGCGACAGAGGTGAAGATTAAGATCACGAAGAGACAGCTGGAGGAGCTTTTGGGGAAAGTGGATATTAAGGAGATGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGGCGTCGGCGATCAGTTTCACGAATCTCGCCACCGTCACTGGCGGCCGGTGTTGCAGAGTATACCGGAAGTTGATTGA MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD Homology
BLAST of Csor.00g037310.m01 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 209 bits (532), Expect = 4.20e-68 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206 bits (523), Expect = 9.91e-67 Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima]) HSP 1 Score: 202 bits (515), Expect = 1.65e-65 Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida]) HSP 1 Score: 171 bits (433), Expect = 6.40e-53 Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia]) HSP 1 Score: 147 bits (370), Expect = 1.67e-43 Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1) HSP 1 Score: 209 bits (532), Expect = 2.03e-68 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1) HSP 1 Score: 202 bits (515), Expect = 7.97e-66 Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1) HSP 1 Score: 147 bits (370), Expect = 8.09e-44 Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. ExPASy TrEMBL
Match: A0A5D2L6Y6 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G434100v1 PE=4 SV=1) HSP 1 Score: 114 bits (285), Expect = 1.41e-30 Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. ExPASy TrEMBL
Match: A0A5D2QUV4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 PE=4 SV=1) HSP 1 Score: 113 bits (283), Expect = 2.83e-30 Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 74.3 bits (181), Expect = 6.3e-14 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 0
BLAST of Csor.00g037310.m01 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10 Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following single feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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